Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006078

Physical Location & Seq

Genomic Coordinates Forward (+)

18594229 .. 18595767

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAATTTTTATTTATTATTAGTTGCGAGGAAAGTGGGTACGGACTCCTATGTAAGTTTTAAGAAGAACGAGTCGAGCCACTCAGATCTAACCGGAAGAACCAAAGCACCAAACTGGAAACAAAAACGACACACTGACTCAGTTCACATTTCACAAACCACTCTCTCTTCTGCTTGCGGCTGCTCCAACTGCTTCTTCTGTTCTCCAACTCTCTGCTCTCTCCCTCTCCTCTTTCTCAGCTGCTACCCTTTGTTTGGATTAATGGGTTCTGGAGGTTGTACCAATGGACTGGAAGAATGCAAACTGCAACCTCCGAAAACTGTGGAAAAATCGGATAAAGCTAGTGTTTTGGGGCTTCATAAGGACGCTGCAGAACCACCGGTTGAATTGGTTGCTAATGGGGTGGCTTCTCTAGAGCCTGTTACTCCTAATGCAGTCCGAGAGAACGGTGACTTACCTGTTGGTTTGAAATCTCCGCCCTCTGTTTGCAAGAAATCATCCAATGTAACTTGCTTGAATCCGAATGCTATCCGAAATGGGGACGACCCATTTGGTTGTTCTGATGATAGCAGCCCCAGGACACCGGTGGATGATGTGTTCGATCCTTTTGCCCCTGCTCGGGAAGACCTGCTTAAGGCGCCACAGTGCAAAAAATATGTCAGCAAGTGCAGGGGCATGGTTGCTCGTCAGCTTAACTTTGATTCTCCCGTCCAAATTTCAGAAGACGAGGTTTTGACTGATGTGGAATCCATTTCGGATGAAGAAATGTTTGAAGCTGTGTATAAAAACCTATTGGAAGCTATCGTGTCAGAGCAAACTGAGGGAGCTATTGCTGACCGCTCGAGGAAAGATTGCGTTTCTGATGACTGCGTAACACCTCGTCCAGAACCGCGTCAAACTGGAGCAGCTGAAACGTGTCCTGGGGCACCCCTGAGGCCATCAGGGAAGTCAAGGAACATCGATATGCGGTTAATCAGAAAGCTCGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

331

Amino Acids

35.87

Weight (kDa)

5.57

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08035 AT1G08035 AT1G08035 AT2G28330
fragaria_vesca	FvH4_6g09290 FvH4_6g09290 FvH4_6g09290
malus_domestica	MD04G1179200.v1.1
prunus_persica	Prupe.6G299000_v2.0.a1
pyrus_communis	pycom04g15830
rosa_chinensis	RchiOBHm_Chr3g0459671
rosa_laevigata	RLG00000025068
rosa_multiflora	Rmu_co8248847.1_g000001 Rmu_sc0000240.1_g000020
rosa_roxburghii	Rroxscaffold_6G00420090
rosa_rugosa	Rorug03G0037000 Rorug03G0037100 Rorug03G0037200 Rorug03G0037300 Rorug03G0037400
rosa_samantha	Rh3AG095900 Rh3BG098400 Rh3BG098500 Rh3CG100400 Rh3DG099800
rosa_wichuraiana	Rw0G013770 Rw0G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	636
AccB1I	GGYRCC	2 cut(s)	637, 925
AccBSI	CCGCTC	1 cut(s)	840
AccII	CGCG	1 cut(s)	892
AciI	CCGC	5 cut(s)	177, 476, 838, 890, 967
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	2 cut(s)	4, 714
AcyI	GRCGYC	1 cut(s)	638
AfaI	GTAC	2 cut(s)	40, 280
AfiI	CCNNNNNNNGG	5 cut(s)	254, 538, 618, 619, 634
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	1 cut(s)	914
AgeI	ACCGGT	2 cut(s)	379, 583
AgsI	TTSAA	4 cut(s)	386, 469, 517, 773
AjnI	CCWGG	2 cut(s)	575, 919
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AloI	GAACNNNNNNTCC	2 cut(s)	581, 613
AluBI	AGCT	8 cut(s)	240, 341, 691, 776, 800, 827, 908, 982
AluI	AGCT	8 cut(s)	240, 341, 691, 776, 800, 827, 908, 982
AlwI	GGATC	1 cut(s)	596
Ama87I	CYCGRG	3 cut(s)	618, 841, 983
AoxI	GGCC	1 cut(s)	935
ApeKI	GCWGC	5 cut(s)	180, 240, 368, 570, 905
ApoI	RAATTY	2 cut(s)	4, 714
ArsI	GACNNNNNNTTYG	4 cut(s)	533, 565, 642, 674
AseI	ATTAAT	1 cut(s)	260
AsiGI	ACCGGT	2 cut(s)	379, 583
AspLEI	GCGC	1 cut(s)	640
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	3 cut(s)	618, 841, 983
AxyI	CCTNAGG	1 cut(s)	932
BaeGI	GKGCMC	1 cut(s)	928
BanI	GGYRCC	2 cut(s)	637, 925
BbsI	GAAGAC	2 cut(s)	630, 729
BbvI	GCAGC	5 cut(s)	167, 227, 355, 582, 917
BccI	CCATC	1 cut(s)	946
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	2 cut(s)	577, 921
BfaI	CTAG	2 cut(s)	342, 413
BfmI	CTRYAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	641
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	636
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	6 cut(s)	178, 181, 241, 369, 571, 906
BlsI	GCNGC	6 cut(s)	179, 182, 242, 370, 572, 907
Bme1390I	CCNGG	2 cut(s)	577, 921
BmeT110I	CYCGRG	3 cut(s)	618, 841, 983
BmiI	GGNNCC	2 cut(s)	639, 927
BmrFI	CCNGG	2 cut(s)	577, 921
BpiI	GAAGAC	2 cut(s)	630, 729
BpmI	CTGGAG	2 cut(s)	291, 921
Bsa29I	ATCGAT	1 cut(s)	960
BsaHI	GRCGYC	1 cut(s)	638
BsaJI	CCNNGG	2 cut(s)	575, 920
BsaWI	WCCGGW	3 cut(s)	92, 379, 583
Bsc4I	CCNNNNNNNGG	5 cut(s)	254, 538, 618, 619, 634
Bse118I	RCCGGY	2 cut(s)	379, 583
Bse1I	ACTGG	3 cut(s)	119, 294, 904
Bse21I	CCTNAGG	1 cut(s)	932
BseBI	CCWGG	2 cut(s)	577, 921
BseCI	ATCGAT	1 cut(s)	960
BseDI	CCNNGG	2 cut(s)	575, 920
BseGI	GGATG	3 cut(s)	497, 595, 763
BseLI	CCNNNNNNNGG	5 cut(s)	254, 538, 618, 619, 634
BseMII	CTCAG	5 cut(s)	96, 153, 250, 810, 923
BseNI	ACTGG	3 cut(s)	119, 294, 904
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	928
BseXI	GCAGC	5 cut(s)	167, 227, 355, 582, 917
BsgI	GTGCAG	1 cut(s)	688
Bsh1236I	CGCG	1 cut(s)	892
BshFI	GGCC	1 cut(s)	937
BshNI	GGYRCC	2 cut(s)	637, 925
BshTI	ACCGGT	2 cut(s)	379, 583
BshVI	ATCGAT	1 cut(s)	960
BsiHKCI	CYCGRG	3 cut(s)	618, 841, 983
BsiSI	CCGG	3 cut(s)	93, 380, 584
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	5 cut(s)	254, 538, 618, 619, 634
BsmFI	GGGAC	1 cut(s)	554
BsmI	GAATGC	2 cut(s)	302, 529
BsnI	GGCC	1 cut(s)	937
BsoBI	CYCGRG	3 cut(s)	618, 841, 983
Bsp1286I	GDGCHC	1 cut(s)	928
Bsp143I	GATC	2 cut(s)	85, 601
BspACI	CCGC	5 cut(s)	177, 476, 838, 890, 967
BspANI	GGCC	1 cut(s)	937
BspCNI	CTCAG	5 cut(s)	95, 152, 249, 811, 924
BspDI	ATCGAT	1 cut(s)	960
BspFNI	CGCG	1 cut(s)	892
BspLI	GGNNCC	2 cut(s)	639, 927
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	636
BspPI	GGATC	1 cut(s)	596
BspT107I	GGYRCC	2 cut(s)	637, 925
BspTI	CTTAAG	1 cut(s)	632
BsrBI	CCGCTC	1 cut(s)	840
BsrFI	RCCGGY	2 cut(s)	379, 583
BsrI	ACTGG	3 cut(s)	119, 294, 904
BssAI	RCCGGY	2 cut(s)	379, 583
BssECI	CCNNGG	2 cut(s)	575, 920
BssMI	GATC	2 cut(s)	85, 601
BssNI	GRCGYC	1 cut(s)	638
Bst2UI	CCWGG	2 cut(s)	577, 921
Bst4CI	ACNGT	3 cut(s)	322, 449, 645
Bst6I	CTCTTC	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	638
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	5 cut(s)	82, 139, 236, 819, 932
BstENI	CCTNNNNNAGG	1 cut(s)	632
BstF5I	GGATG	3 cut(s)	497, 595, 763
BstFNI	CGCG	1 cut(s)	892
BstH2I	RGCGCY	1 cut(s)	641
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	2 cut(s)	88, 604
BstMBI	GATC	2 cut(s)	85, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 637
BstNI	CCWGG	2 cut(s)	577, 921
BstSCI	CCNGG	2 cut(s)	575, 919
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	928
BstUI	CGCG	1 cut(s)	892
BstV1I	GCAGC	5 cut(s)	167, 227, 355, 582, 917
BstV2I	GAAGAC	2 cut(s)	630, 729
BstX2I	RGATCY	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	960
Bsu36I	CCTNAGG	1 cut(s)	932
BsuRI	GGCC	1 cut(s)	937
BsuTUI	ATCGAT	1 cut(s)	960
BtsCI	GGATG	3 cut(s)	497, 595, 763
BtsIMutI	CAGTG	2 cut(s)	132, 650
BveI	ACCTGC	1 cut(s)	636
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	640
Cfr10I	RCCGGY	2 cut(s)	379, 583
ClaI	ATCGAT	1 cut(s)	960
CseI	GACGC	2 cut(s)	374, 881
Csp6I	GTAC	2 cut(s)	39, 279
CspAI	ACCGGT	2 cut(s)	379, 583
CviAII	CATG	1 cut(s)	676
CviQI	GTAC	2 cut(s)	39, 279
DdeI	CTNAG	5 cut(s)	82, 139, 236, 819, 932
DinI	GGCGCC	1 cut(s)	639
DpnI	GATC	2 cut(s)	87, 603
DpnII	GATC	2 cut(s)	85, 601
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	465
Eco81I	CCTNAGG	1 cut(s)	932
Eco88I	CYCGRG	3 cut(s)	618, 841, 983
EcoNI	CCTNNNNNAGG	1 cut(s)	632
EcoRII	CCWGG	2 cut(s)	575, 919
EgeI	GGCGCC	1 cut(s)	639
EheI	GGCGCC	1 cut(s)	639
FaeI	CATG	1 cut(s)	679
FaiI	YATR	6 cut(s)	51, 360, 657, 677, 783, 965
FalI	AAGNNNNNCTT	2 cut(s)	615, 647
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	675
Fnu4HI	GCNGC	6 cut(s)	178, 181, 241, 369, 571, 906
FokI	GGATG	3 cut(s)	484, 602, 770
Fsp4HI	GCNGC	6 cut(s)	178, 181, 241, 369, 571, 906
FspBI	CTAG	2 cut(s)	342, 413
GlaI	GCGC	1 cut(s)	639
GluI	GCNGC	6 cut(s)	178, 181, 241, 369, 571, 906
GsuI	CTGGAG	2 cut(s)	291, 921
HaeII	RGCGCY	1 cut(s)	641
HaeIII	GGCC	1 cut(s)	937
HapII	CCGG	3 cut(s)	93, 380, 584
HgaI	GACGC	2 cut(s)	374, 881
HhaI	GCGC	1 cut(s)	640
Hin1I	GRCGYC	1 cut(s)	638
Hin1II	CATG	1 cut(s)	679
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HinfI	GANTC	6 cut(s)	44, 71, 137, 517, 701, 746
HpaII	CCGG	3 cut(s)	93, 380, 584
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	4 cut(s)	270, 413, 620, 884
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	3 cut(s)	322, 449, 645
HpyCH4IV	ACGT	1 cut(s)	914
HpyCH4V	TGCA	7 cut(s)	300, 307, 371, 434, 489, 648, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 637
HpyF3I	CTNAG	5 cut(s)	82, 139, 236, 819, 932
HpySE526I	ACGT	1 cut(s)	914
Hsp92I	GRCGYC	1 cut(s)	638
Hsp92II	CATG	1 cut(s)	679
HspAI	GCGC	1 cut(s)	638
KasI	GGCGCC	1 cut(s)	637
Kzo9I	GATC	2 cut(s)	85, 601
LmnI	GCTCC	3 cut(s)	188, 824, 902
Lsp1109I	GCAGC	5 cut(s)	167, 227, 355, 582, 917
MaeI	CTAG	2 cut(s)	342, 413
MaeII	ACGT	1 cut(s)	914
MaeIII	GTNAC	4 cut(s)	421, 449, 505, 871
MalI	GATC	2 cut(s)	87, 603
MbiI	CCGCTC	1 cut(s)	840
MboI	GATC	2 cut(s)	85, 601
MboII	GAAGA	8 cut(s)	76, 108, 159, 187, 305, 635, 734, 773
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	928
MluCI	AATT	3 cut(s)	4, 386, 714
Mly113I	GGCGCC	1 cut(s)	638
MlyI	GAGTC	3 cut(s)	38, 80, 131
MmeI	TCCRAC	2 cut(s)	210, 230
MseI	TTAA	5 cut(s)	60, 260, 633, 693, 971
MslI	CAYNNNNRTG	1 cut(s)	962
MspA1I	CMGCKG	2 cut(s)	240, 908
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	3 cut(s)	93, 380, 584
MspR9I	CCNGG	2 cut(s)	577, 921
Mva1269I	GAATGC	2 cut(s)	302, 529
MvaI	CCWGG	2 cut(s)	577, 921
MvnI	CGCG	1 cut(s)	892
MwoI	GCNNNNNNNGC	2 cut(s)	189, 637
NarI	GGCGCC	1 cut(s)	638
NdeII	GATC	2 cut(s)	85, 601
NlaIII	CATG	1 cut(s)	679
NlaIV	GGNNCC	2 cut(s)	639, 927
NmuCI	GTSAC	1 cut(s)	449
PaeR7I	CTCGAG	2 cut(s)	841, 983
PctI	GAATGC	2 cut(s)	302, 529
PfeI	GAWTC	3 cut(s)	517, 701, 746
PinAI	ACCGGT	2 cut(s)	379, 583
PkrI	GCNGC	6 cut(s)	179, 182, 242, 370, 572, 907
PleI	GAGTC	3 cut(s)	38, 79, 131
PluTI	GGCGCC	1 cut(s)	641
PpsI	GAGTC	3 cut(s)	38, 79, 131
PshBI	ATTAAT	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	575, 919
PspGI	CCWGG	2 cut(s)	575, 919
PspN4I	GGNNCC	2 cut(s)	639, 927
PspXI	VCTCGAGB	2 cut(s)	841, 983
PstI	CTGCAG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	2 cut(s)	240, 908
RsaI	GTAC	2 cut(s)	40, 280
RsaNI	GTAC	2 cut(s)	39, 279
RseI	CAYNNNNRTG	1 cut(s)	962
SaqAI	TTAA	5 cut(s)	60, 260, 633, 693, 971
SatI	GCNGC	6 cut(s)	178, 181, 241, 369, 571, 906
Sau3AI	GATC	2 cut(s)	85, 601
SchI	GAGTC	3 cut(s)	38, 80, 131
ScrFI	CCNGG	2 cut(s)	577, 921
SduI	GDGCHC	1 cut(s)	928
SfcI	CTRYAG	1 cut(s)	369
SfoI	GGCGCC	1 cut(s)	639
Sfr274I	CTCGAG	2 cut(s)	841, 983
SgrAI	CRCCGGYG	1 cut(s)	583
SlaI	CTCGAG	2 cut(s)	841, 983
SmiMI	CAYNNNNRTG	1 cut(s)	962
SmlI	CTYRAG	3 cut(s)	632, 841, 983
SmoI	CTYRAG	3 cut(s)	632, 841, 983
Sse9I	AATT	3 cut(s)	4, 386, 714
SsiI	CCGC	5 cut(s)	177, 476, 838, 890, 967
SspDI	GGCGCC	1 cut(s)	637
SspMI	CTAG	2 cut(s)	342, 413
StyD4I	CCNGG	2 cut(s)	575, 919
TaaI	ACNGT	3 cut(s)	322, 449, 645
TaiI	ACGT	1 cut(s)	917
TaqI	TCGA	5 cut(s)	74, 600, 842, 960, 984
TasI	AATT	3 cut(s)	4, 386, 714
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	3 cut(s)	517, 701, 746
Tru1I	TTAA	5 cut(s)	60, 260, 633, 693, 971
Tru9I	TTAA	5 cut(s)	60, 260, 633, 693, 971
TscAI	CASTG	2 cut(s)	139, 650
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	5 cut(s)	180, 240, 368, 570, 905
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	17, 347, 774
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	139, 650
Vha464I	CTTAAG	1 cut(s)	632
VspI	ATTAAT	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	632
XapI	RAATTY	2 cut(s)	4, 714
XbaI	TCTAGA	1 cut(s)	412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XhoI	CTCGAG	2 cut(s)	841, 983
XspI	CTAG	2 cut(s)	342, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.