Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006078

Physical Location & Seq

Genomic Coordinates Reverse (-)

5513513 .. 5515486

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGTTCTGGAGGTTGTGCCGATGATATTTTGGAATGTAAAGAATCTTGTGAAAATTTGGACAAGGCTGGGGAGCTGCAAAAGGATGGTGCTGAGCCACAAGTGGAATTAGGGCCTATTACCCCTGAAGCTGACAGAGAGAATGGGGAATCCCAACCAACATTTTTTAAGAAACCGTCAGTTTTAACTGTCAGGTCCAACAGAGATGGGGATGACCCTTTTGGTCTTTCTGATGATAGCTCCGGGAGTCCCCGGACACCTGAGGATGGAGTTTTTGATCCCTTTGCCCCTGGTCCAGAGAAGCTGGCAATGGCGCCTATGTGTAAGAAGTTTGTCAGCAAAGCGAGGAGTGTGGTTGCTCGTCAACTGAGTTTTGATTCTCTGGTTCAAACTTCGGATGATGAGACTTCTACCGACAGTGTGGAGTCCCTTTCTGATGAAGACATGTTTGAAGCTGTGTATGAAAGTTTGTTGGAAGCTATTGTATCTGATCTGACTCTCAGCGTCCTTGGTGAACATGCAAGGAAGGATTGGGACTGTGGTGATGACTGTACAACACCTCCAGGAACTCGATTAAATGGAATTGCTGAAACCTGCCCCGGTGCTCCCTTGAGGCCTGTAGGGAAATCAAGGAAGATTGATTTGGGCTTAATCAGAAAGCTCGAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

23.99

Weight (kDa)

4.36

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08035 AT1G08035 AT1G08035 AT2G28330
fragaria_vesca	FvH4_6g09290 FvH4_6g09290 FvH4_6g09290
malus_domestica	MD04G1179200.v1.1
prunus_persica	Prupe.6G299000_v2.0.a1
pyrus_communis	pycom04g15830
rosa_chinensis	RchiOBHm_Chr3g0459671
rosa_laevigata	RLG00000025068
rosa_multiflora	Rmu_co8248847.1_g000001 Rmu_sc0000240.1_g000020
rosa_roxburghii	Rroxscaffold_6G00420090
rosa_rugosa	Rorug03G0037000 Rorug03G0037100 Rorug03G0037200 Rorug03G0037300 Rorug03G0037400
rosa_samantha	Rh3AG095900 Rh3BG098400 Rh3BG098500 Rh3CG100400 Rh3DG099800
rosa_wichuraiana	Rw0G013770 Rw0G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	313
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	55, 665
AcuI	CTGAAG	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	314
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	389, 452
AjnI	CCWGG	2 cut(s)	289, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	7 cut(s)	76, 131, 240, 304, 455, 479, 661
AluI	AGCT	7 cut(s)	76, 131, 240, 304, 455, 479, 661
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	2 cut(s)	113, 614
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	2 cut(s)	55, 665
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	3 cut(s)	113, 195, 293
AsuC2I	CCSGG	3 cut(s)	244, 253, 600
AsuHPI	GGTGA	2 cut(s)	524, 554
AvaII	GGWCC	2 cut(s)	195, 293
AxyI	CCTNAGG	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	3 cut(s)	80, 200, 260
BciT130I	CCWGG	2 cut(s)	291, 564
BcnI	CCSGG	3 cut(s)	244, 253, 600
BcoDI	GTCTC	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	602
BisI	GCNGC	1 cut(s)	77
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	5 cut(s)	244, 253, 291, 564, 600
Bme18I	GGWCC	2 cut(s)	195, 293
BmgT120I	GGNCC	3 cut(s)	113, 195, 293
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	5 cut(s)	244, 253, 291, 564, 600
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	2 cut(s)	30, 546
Bpu1102I	GCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	631
BpuMI	CCSGG	3 cut(s)	244, 253, 600
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	251, 289, 508, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	291, 564
BseDI	CCNNGG	4 cut(s)	251, 289, 508, 598
BseGI	GGATG	4 cut(s)	91, 217, 271, 403
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	4 cut(s)	84, 252, 359, 514
BseRI	GAGGAG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	63
BseYI	CCCAGC	1 cut(s)	68
BshFI	GGCC	2 cut(s)	115, 616
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	3 cut(s)	243, 253, 600
BslFI	GGGAC	3 cut(s)	234, 412, 548
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	3 cut(s)	234, 412, 548
BsnI	GGCC	2 cut(s)	115, 616
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp1407I	TGTACA	1 cut(s)	551
Bsp143I	GATC	2 cut(s)	277, 490
Bsp1720I	GCTNAGC	1 cut(s)	93
BspANI	GGCC	2 cut(s)	115, 616
BspCNI	CTCAG	4 cut(s)	85, 253, 360, 513
BspLI	GGNNCC	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	551
BssECI	CCNNGG	4 cut(s)	251, 289, 508, 598
BssMI	GATC	2 cut(s)	277, 490
BssNI	GRCGYC	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	2 cut(s)	291, 564
Bst4CI	ACNGT	5 cut(s)	177, 190, 419, 539, 551
BstACI	GRCGYC	1 cut(s)	314
BstAUI	TGTACA	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	4 cut(s)	93, 261, 368, 500
BstF5I	GGATG	4 cut(s)	91, 217, 271, 403
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	280, 493
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	2 cut(s)	277, 490
BstNI	CCWGG	2 cut(s)	291, 564
BstNSI	RCATGY	2 cut(s)	448, 521
BstSCI	CCNGG	5 cut(s)	242, 251, 289, 562, 598
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	115, 616
BtsCI	GGATG	4 cut(s)	91, 217, 271, 403
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	3 cut(s)	113, 195, 293
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	2 cut(s)	445, 518
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	4 cut(s)	93, 261, 368, 500
DinI	GGCGCC	1 cut(s)	315
DpnI	GATC	2 cut(s)	279, 492
DpnII	GATC	2 cut(s)	277, 490
Eco130I	CCWWGG	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	616
Eco47I	GGWCC	2 cut(s)	195, 293
Eco57I	CTGAAG	1 cut(s)	147
Eco81I	CCTNAGG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	289, 562
EcoT14I	CCWWGG	1 cut(s)	508
EgeI	GGCGCC	1 cut(s)	315
EheI	GGCGCC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	2 cut(s)	448, 521
FaiI	YATR	4 cut(s)	320, 446, 462, 519
FaqI	GGGAC	3 cut(s)	234, 412, 548
FatI	CATG	2 cut(s)	444, 517
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	4 cut(s)	98, 224, 278, 410
Fsp4HI	GCNGC	1 cut(s)	77
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	77
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	2 cut(s)	30, 546
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	115, 616
HapII	CCGG	3 cut(s)	243, 253, 600
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	2 cut(s)	448, 521
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	365
HindII	GTYRAC	1 cut(s)	365
HinfI	GANTC	6 cut(s)	44, 149, 247, 377, 425, 496
HpaII	CCGG	3 cut(s)	243, 253, 600
HphI	GGTGA	2 cut(s)	524, 554
Hpy166II	GTNNAC	2 cut(s)	365, 515
Hpy188I	TCNGA	6 cut(s)	232, 397, 436, 490, 495, 656
Hpy188III	TCNNGA	2 cut(s)	9, 296
Hpy8I	GTNNAC	2 cut(s)	365, 515
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	5 cut(s)	177, 190, 419, 539, 551
HpyCH4V	TGCA	2 cut(s)	79, 521
HpyF3I	CTNAG	4 cut(s)	93, 261, 368, 500
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	2 cut(s)	448, 521
HspAI	GCGC	1 cut(s)	314
KasI	GGCGCC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	277, 490
LmnI	GCTCC	3 cut(s)	73, 245, 610
Lsp1109I	GCAGC	1 cut(s)	63
MalI	GATC	2 cut(s)	279, 492
MboI	GATC	2 cut(s)	277, 490
MboII	GAAGA	2 cut(s)	452, 646
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	4 cut(s)	55, 107, 582, 665
Mly113I	GGCGCC	1 cut(s)	314
MlyI	GAGTC	3 cut(s)	256, 434, 490
MmeI	TCCRAC	2 cut(s)	222, 453
MnlI	CCTC	5 cut(s)	5, 256, 339, 570, 606
MseI	TTAA	5 cut(s)	168, 185, 575, 650, 670
MspI	CCGG	3 cut(s)	243, 253, 600
MspR9I	CCNGG	5 cut(s)	244, 253, 291, 564, 600
MvaI	CCWGG	2 cut(s)	291, 564
NarI	GGCGCC	1 cut(s)	314
NciI	CCSGG	3 cut(s)	244, 253, 600
NdeII	GATC	2 cut(s)	277, 490
NlaIII	CATG	2 cut(s)	448, 521
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	2 cut(s)	448, 521
PceI	AGGCCT	1 cut(s)	616
PciI	ACATGT	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	44, 149, 377
PfoI	TCCNGGA	2 cut(s)	242, 562
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	3 cut(s)	255, 433, 490
PluTI	GGCGCC	1 cut(s)	317
PpsI	GAGTC	3 cut(s)	255, 433, 490
PscI	ACATGT	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	289, 562
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	2 cut(s)	289, 562
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	3 cut(s)	113, 195, 293
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	5 cut(s)	168, 185, 575, 650, 670
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	2 cut(s)	277, 490
Sau96I	GGNCC	3 cut(s)	113, 195, 293
SchI	GAGTC	3 cut(s)	256, 434, 490
ScrFI	CCNGG	5 cut(s)	244, 253, 291, 564, 600
SduI	GDGCHC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	618
SfoI	GGCGCC	1 cut(s)	315
SinI	GGWCC	2 cut(s)	195, 293
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
Sse9I	AATT	4 cut(s)	55, 107, 582, 665
SseBI	AGGCCT	1 cut(s)	616
SspDI	GGCGCC	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	616
StyD4I	CCNGG	5 cut(s)	242, 251, 289, 562, 598
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	5 cut(s)	177, 190, 419, 539, 551
TaqI	TCGA	2 cut(s)	571, 663
TasI	AATT	4 cut(s)	55, 107, 582, 665
TatI	WGTACW	1 cut(s)	551
TfiI	GAWTC	3 cut(s)	44, 149, 377
Tru1I	TTAA	5 cut(s)	168, 185, 575, 650, 670
Tru9I	TTAA	5 cut(s)	168, 185, 575, 650, 670
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	453, 477
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	195, 293
XapI	RAATTY	2 cut(s)	55, 665
XceI	RCATGY	2 cut(s)	448, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.