Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00786

Orthogroup ID

OG0006078

Physical Location & Seq

Genomic Coordinates Reverse (-)

81511 .. 82199

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGTTCTGGAGGTTGTACCAATGATATTTTGGAATTCCAAGAACAATCTCCAAAATCTTGTGAAGATTTGGACAAGGCTAAGGTTGGGGAGCCGCAAAAGGATGGTGCTGAGCCACAAGCTGAATTAGGGCCTATTACTCCTGAAGCTGACCGAGAGAATGGGGAATCCCAACCAACATTTTTGAAGAAACCGCCAGTTTTAACTGTCAAGTCCAATAGAGATGGGGATGACCCTTTTGGTCTTTCTGATGATAGCAGCGGCAGCCCCAGGACACCTGAGGATGGAGTTTTTGATCCCTTTGCCCCTGGTCCGGAGAAGCTGGCAATGGCGCCTATGTGTAAGAAGTTTGTCAGCAAGTCGAGGAGTGTGGTTGCTCGTCAGCTGAGTTTTGATTCTCCGGTACAAATTTCAGAAGATGAGATTTCTACCAATGCTGTGTATGAAAATTTATTGGAAGCTATTGTATCTGATCTGACTCTCAGTGTTCTTGGTGAACGTGCAAGGAAGGATTGGGACTGTGGTGATGACTGTACAACACCTCCTGGAACTCGGCTAAGTGGAATTGCTGAAACCTGTCCCGGTGCTCCCTCGAGGCCCTCTGGGAAATCAAGGAAGATTGATTTGGGCTTAATCAGAAAGCTCGAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

23.29

Weight (kDa)

4.6

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08035 AT1G08035 AT1G08035 AT2G28330
fragaria_vesca	FvH4_6g09290 FvH4_6g09290 FvH4_6g09290
malus_domestica	MD04G1179200.v1.1
prunus_persica	Prupe.6G299000_v2.0.a1
pyrus_communis	pycom04g15830
rosa_chinensis	RchiOBHm_Chr3g0459671
rosa_laevigata	RLG00000025068
rosa_multiflora	Rmu_co8248847.1_g000001 Rmu_sc0000240.1_g000020
rosa_roxburghii	Rroxscaffold_6G00420090
rosa_rugosa	Rorug03G0037000 Rorug03G0037100 Rorug03G0037200 Rorug03G0037300 Rorug03G0037400
rosa_samantha	Rh3AG095900 Rh3BG098400 Rh3BG098500 Rh3CG100400 Rh3DG099800
rosa_wichuraiana	Rw0G013770 Rw0G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	331
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	3 cut(s)	95, 194, 261
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	4 cut(s)	35, 408, 448, 647
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	19, 405, 535
AfiI	CCNNNNNNNGG	2 cut(s)	284, 313
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	3 cut(s)	269, 307, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
AluBI	AGCT	6 cut(s)	122, 149, 322, 385, 461, 643
AluI	AGCT	6 cut(s)	122, 149, 322, 385, 461, 643
Alw21I	GWGCWC	1 cut(s)	589
AlwI	GGATC	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	592
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	2 cut(s)	131, 596
ApeKI	GCWGC	2 cut(s)	258, 264
ApoI	RAATTY	4 cut(s)	35, 408, 448, 647
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	3 cut(s)	131, 311, 597
AsuC2I	CCSGG	1 cut(s)	582
AsuHPI	GGTGA	2 cut(s)	506, 536
AvaI	CYCGRG	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	589
BbvI	GCAGC	2 cut(s)	270, 276
BccI	CCATC	3 cut(s)	98, 218, 278
BciT130I	CCWGG	3 cut(s)	271, 309, 546
BcnI	CCSGG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	335
BisI	GCNGC	4 cut(s)	95, 259, 262, 265
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	4 cut(s)	96, 260, 263, 266
Bme1390I	CCNGG	4 cut(s)	271, 309, 546, 582
Bme18I	GGWCC	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	592
BmgT120I	GGNCC	3 cut(s)	131, 311, 597
BmiI	GGNNCC	2 cut(s)	93, 333
BmrFI	CCNGG	4 cut(s)	271, 309, 546, 582
BpmI	CTGGAG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	582
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	269, 307
BsaWI	WCCGGW	2 cut(s)	313, 400
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 313
Bse1I	ACTGG	1 cut(s)	197
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	3 cut(s)	271, 309, 546
BseDI	CCNNGG	2 cut(s)	269, 307
BseGI	GGATG	3 cut(s)	109, 235, 289
BseLI	CCNNNNNNNGG	2 cut(s)	284, 313
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	4 cut(s)	102, 270, 377, 496
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	270, 276
BshFI	GGCC	2 cut(s)	133, 598
BshNI	GGYRCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	589
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	3 cut(s)	314, 401, 582
BslFI	GGGAC	2 cut(s)	530, 564
BslI	CCNNNNNNNGG	2 cut(s)	284, 313
BsmFI	GGGAC	2 cut(s)	530, 564
BsnI	GGCC	2 cut(s)	133, 598
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp13I	TCCGGA	1 cut(s)	313
Bsp1407I	TGTACA	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	295, 472
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	95, 194, 261
BspANI	GGCC	2 cut(s)	133, 598
BspCNI	CTCAG	4 cut(s)	103, 271, 378, 495
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	93, 333
BspPI	GGATC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	333
BsrGI	TGTACA	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	269, 307
BssMI	GATC	2 cut(s)	295, 472
BssNI	GRCGYC	1 cut(s)	332
Bst2UI	CCWGG	3 cut(s)	271, 309, 546
Bst4CI	ACNGT	3 cut(s)	208, 521, 533
BstACI	GRCGYC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	6 cut(s)	81, 111, 279, 386, 482, 557
BstF5I	GGATG	3 cut(s)	109, 235, 289
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	2 cut(s)	298, 475
BstMBI	GATC	2 cut(s)	295, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	3 cut(s)	271, 309, 546
BstSCI	CCNGG	4 cut(s)	269, 307, 544, 580
BstV1I	GCAGC	2 cut(s)	270, 276
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	133, 598
BtsCI	GGATG	3 cut(s)	109, 235, 289
BtsIMutI	CAGTG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	3 cut(s)	131, 311, 597
Csp6I	GTAC	3 cut(s)	18, 404, 534
CviQI	GTAC	3 cut(s)	18, 404, 534
DdeI	CTNAG	6 cut(s)	81, 111, 279, 386, 482, 557
DinI	GGCGCC	1 cut(s)	333
DpnI	GATC	2 cut(s)	297, 474
DpnII	GATC	2 cut(s)	295, 472
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	165
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	592
EcoO109I	RGGNCCY	2 cut(s)	131, 597
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	3 cut(s)	269, 307, 544
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
FaiI	YATR	2 cut(s)	338, 444
FaqI	GGGAC	2 cut(s)	530, 564
Fnu4HI	GCNGC	4 cut(s)	95, 259, 262, 265
FokI	GGATG	3 cut(s)	116, 242, 296
Fsp4HI	GCNGC	4 cut(s)	95, 259, 262, 265
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	4 cut(s)	95, 259, 262, 265
GsuI	CTGGAG	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	133, 598
HapII	CCGG	3 cut(s)	314, 401, 582
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	3 cut(s)	167, 395, 478
HpaII	CCGG	3 cut(s)	314, 401, 582
HphI	GGTGA	2 cut(s)	506, 536
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188I	TCNGA	5 cut(s)	250, 415, 472, 477, 638
Hpy188III	TCNNGA	3 cut(s)	9, 143, 314
Hpy8I	GTNNAC	1 cut(s)	497
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	3 cut(s)	208, 521, 533
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	6 cut(s)	81, 111, 279, 386, 482, 557
HpySE526I	ACGT	1 cut(s)	499
Hsp92I	GRCGYC	1 cut(s)	332
HspAI	GCGC	1 cut(s)	332
KasI	GGCGCC	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	295, 472
LmnI	GCTCC	2 cut(s)	91, 592
Lsp1109I	GCAGC	2 cut(s)	270, 276
MaeII	ACGT	1 cut(s)	499
MalI	GATC	2 cut(s)	297, 474
MboI	GATC	2 cut(s)	295, 472
MboII	GAAGA	4 cut(s)	77, 199, 428, 628
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	6 cut(s)	35, 125, 408, 448, 564, 647
Mly113I	GGCGCC	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	472
MnlI	CCTC	7 cut(s)	5, 274, 357, 552, 588, 601, 610
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	3 cut(s)	203, 632, 652
MspA1I	CMGCKG	2 cut(s)	261, 385
MspI	CCGG	3 cut(s)	314, 401, 582
MspR9I	CCNGG	4 cut(s)	271, 309, 546, 582
MvaI	CCWGG	3 cut(s)	271, 309, 546
MwoI	GCNNNNNNNGC	1 cut(s)	264
NarI	GGCGCC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	582
NdeII	GATC	2 cut(s)	295, 472
NlaIV	GGNNCC	2 cut(s)	93, 333
NmeAIII	GCCGAG	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	592
PfeI	GAWTC	2 cut(s)	167, 395
PfoI	TCCNGGA	1 cut(s)	544
PkrI	GCNGC	4 cut(s)	96, 260, 263, 266
PleI	GAGTC	1 cut(s)	472
PluTI	GGCGCC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	472
Psp6I	CCWGG	3 cut(s)	269, 307, 544
PspGI	CCWGG	3 cut(s)	269, 307, 544
PspN4I	GGNNCC	2 cut(s)	93, 333
PspPI	GGNCC	3 cut(s)	131, 311, 597
PspXI	VCTCGAGB	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	3 cut(s)	19, 405, 535
RsaNI	GTAC	3 cut(s)	18, 404, 534
SaqAI	TTAA	3 cut(s)	203, 632, 652
SatI	GCNGC	4 cut(s)	95, 259, 262, 265
Sau3AI	GATC	2 cut(s)	295, 472
Sau96I	GGNCC	3 cut(s)	131, 311, 597
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	4 cut(s)	271, 309, 546, 582
SduI	GDGCHC	1 cut(s)	589
SfoI	GGCGCC	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	592
SinI	GGWCC	1 cut(s)	311
SlaI	CTCGAG	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
Sse9I	AATT	6 cut(s)	35, 125, 408, 448, 564, 647
SsiI	CCGC	3 cut(s)	95, 194, 261
SspDI	GGCGCC	1 cut(s)	331
StyD4I	CCNGG	4 cut(s)	269, 307, 544, 580
TaaI	ACNGT	3 cut(s)	208, 521, 533
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	3 cut(s)	362, 593, 645
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	6 cut(s)	35, 125, 408, 448, 564, 647
TatI	WGTACW	1 cut(s)	533
TauI	GCSGC	2 cut(s)	97, 264
TfiI	GAWTC	2 cut(s)	167, 395
Tru1I	TTAA	3 cut(s)	203, 632, 652
Tru9I	TTAA	3 cut(s)	203, 632, 652
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	2 cut(s)	258, 264
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	4 cut(s)	35, 408, 448, 647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.