Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006078

Physical Location & Seq

Genomic Coordinates Reverse (-)

7928943 .. 7930617

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG099800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGTTCTGGAGGTTGTACCAATGATATTTTGGAATTCCAAGAACAATCTCCAAAATCTTGTGAAGATTTGGACAAGGCTAAGGTTGGGGAGCCGCAAAAGGATGGTGCTGAGCCACAAGCTGAATTAGGGCCTATTACTCCTGAAGCTGACCGAGAGAATGGGGAATCCCAACCAACATTTTTGAAGAAACCGCCAGTTTTAACTGTCAAGTCCAATAGAGATGGGGATGACCCTTTTGGTCTTTCTGATGATAGCAGCGGCAGCCCCAGGACACCTGAGGATGGAGTTTTTGATCCCTTTGCCCCTGGTCCGGAGAAGCTGGCAATGGCGCCTATGTGTAAGAAGTTTGTCAGCAAGTCGAGGAGTGTGGTTGCTCGTCAGCTGAGTTTTGATTCTCCGGTACAAATTTCAGAAGATGAGATTTCTACCAATGGTGTGGAGTCCCTTTCGGATGAAGAAATATTTGAAGCTGTGTATGAAAATTTATTGGAAGCTATTGTATCTGATCTGACTCTCAGTGTTCTTGGTGAACGTGCAAGGAAGGATTGGGACTGTGGTGATGACTGTACAACACCTCCTGGAACTCGGCTAAGTGGAATTGCTGAAACCTGTCCCGGTGCTCCCTCGAGGCCCTCTGGGAAATCAAGGAAGATTGATTTGGGCTTAATCAGAAAGCTCGAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.62

Weight (kDa)

4.45

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08035 AT1G08035 AT1G08035 AT2G28330
fragaria_vesca	FvH4_6g09290 FvH4_6g09290 FvH4_6g09290
malus_domestica	MD04G1179200.v1.1
prunus_persica	Prupe.6G299000_v2.0.a1
pyrus_communis	pycom04g15830
rosa_chinensis	RchiOBHm_Chr3g0459671
rosa_laevigata	RLG00000025068
rosa_multiflora	Rmu_co8248847.1_g000001 Rmu_sc0000240.1_g000020
rosa_roxburghii	Rroxscaffold_6G00420090
rosa_rugosa	Rorug03G0037000 Rorug03G0037100 Rorug03G0037200 Rorug03G0037300 Rorug03G0037400
rosa_samantha	Rh3AG095900 Rh3BG098400 Rh3BG098500 Rh3CG100400 Rh3DG099800
rosa_wichuraiana	Rw0G013770 Rw0G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	331
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	3 cut(s)	95, 194, 261
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	4 cut(s)	35, 408, 484, 683
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	19, 405, 571
AfiI	CCNNNNNNNGG	2 cut(s)	284, 313
AgsI	TTSAA	2 cut(s)	187, 470
AjnI	CCWGG	3 cut(s)	269, 307, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	7 cut(s)	122, 149, 322, 385, 473, 497, 679
AluI	AGCT	7 cut(s)	122, 149, 322, 385, 473, 497, 679
Alw21I	GWGCWC	1 cut(s)	625
AlwI	GGATC	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	628
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	2 cut(s)	131, 632
ApeKI	GCWGC	2 cut(s)	258, 264
ApoI	RAATTY	4 cut(s)	35, 408, 484, 683
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	3 cut(s)	131, 311, 633
AsuC2I	CCSGG	1 cut(s)	618
AsuHPI	GGTGA	2 cut(s)	542, 572
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	2 cut(s)	270, 276
BccI	CCATC	3 cut(s)	98, 218, 278
BciT130I	CCWGG	3 cut(s)	271, 309, 582
BcnI	CCSGG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	335
BisI	GCNGC	4 cut(s)	95, 259, 262, 265
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	4 cut(s)	96, 260, 263, 266
Bme1390I	CCNGG	4 cut(s)	271, 309, 582, 618
Bme18I	GGWCC	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	3 cut(s)	131, 311, 633
BmiI	GGNNCC	2 cut(s)	93, 333
BmrFI	CCNGG	4 cut(s)	271, 309, 582, 618
BpmI	CTGGAG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	269, 307
BsaWI	WCCGGW	2 cut(s)	313, 400
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 313
Bse1I	ACTGG	1 cut(s)	197
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	3 cut(s)	271, 309, 582
BseDI	CCNNGG	2 cut(s)	269, 307
BseGI	GGATG	4 cut(s)	109, 235, 289, 460
BseLI	CCNNNNNNNGG	2 cut(s)	284, 313
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	4 cut(s)	102, 270, 377, 532
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	270, 276
BshFI	GGCC	2 cut(s)	133, 634
BshNI	GGYRCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	3 cut(s)	314, 401, 618
BslFI	GGGAC	3 cut(s)	430, 566, 600
BslI	CCNNNNNNNGG	2 cut(s)	284, 313
BsmFI	GGGAC	3 cut(s)	430, 566, 600
BsnI	GGCC	2 cut(s)	133, 634
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp13I	TCCGGA	1 cut(s)	313
Bsp1407I	TGTACA	1 cut(s)	569
Bsp143I	GATC	2 cut(s)	295, 508
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	95, 194, 261
BspANI	GGCC	2 cut(s)	133, 634
BspCNI	CTCAG	4 cut(s)	103, 271, 378, 531
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	93, 333
BspPI	GGATC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	333
BsrGI	TGTACA	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	269, 307
BssMI	GATC	2 cut(s)	295, 508
BssNI	GRCGYC	1 cut(s)	332
Bst2UI	CCWGG	3 cut(s)	271, 309, 582
Bst4CI	ACNGT	3 cut(s)	208, 557, 569
BstACI	GRCGYC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	6 cut(s)	81, 111, 279, 386, 518, 593
BstF5I	GGATG	4 cut(s)	109, 235, 289, 460
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	2 cut(s)	298, 511
BstMBI	GATC	2 cut(s)	295, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	3 cut(s)	271, 309, 582
BstSCI	CCNGG	4 cut(s)	269, 307, 580, 616
BstV1I	GCAGC	2 cut(s)	270, 276
BstXI	CCANNNNNNTGG	1 cut(s)	439
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	133, 634
BtsCI	GGATG	4 cut(s)	109, 235, 289, 460
BtsIMutI	CAGTG	1 cut(s)	526
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	3 cut(s)	131, 311, 633
Csp6I	GTAC	3 cut(s)	18, 404, 570
CviQI	GTAC	3 cut(s)	18, 404, 570
DdeI	CTNAG	6 cut(s)	81, 111, 279, 386, 518, 593
DinI	GGCGCC	1 cut(s)	333
DpnI	GATC	2 cut(s)	297, 510
DpnII	GATC	2 cut(s)	295, 508
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	165
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	628
EcoO109I	RGGNCCY	2 cut(s)	131, 633
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	3 cut(s)	269, 307, 580
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
FaiI	YATR	2 cut(s)	338, 480
FaqI	GGGAC	3 cut(s)	430, 566, 600
Fnu4HI	GCNGC	4 cut(s)	95, 259, 262, 265
FokI	GGATG	4 cut(s)	116, 242, 296, 467
Fsp4HI	GCNGC	4 cut(s)	95, 259, 262, 265
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	4 cut(s)	95, 259, 262, 265
GsuI	CTGGAG	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	133, 634
HapII	CCGG	3 cut(s)	314, 401, 618
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	4 cut(s)	167, 395, 443, 514
HpaII	CCGG	3 cut(s)	314, 401, 618
HphI	GGTGA	2 cut(s)	542, 572
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	6 cut(s)	250, 415, 454, 508, 513, 674
Hpy188III	TCNNGA	3 cut(s)	9, 143, 314
Hpy8I	GTNNAC	1 cut(s)	533
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	3 cut(s)	208, 557, 569
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	6 cut(s)	81, 111, 279, 386, 518, 593
HpySE526I	ACGT	1 cut(s)	535
Hsp92I	GRCGYC	1 cut(s)	332
HspAI	GCGC	1 cut(s)	332
KasI	GGCGCC	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	295, 508
LmnI	GCTCC	2 cut(s)	91, 628
Lsp1109I	GCAGC	2 cut(s)	270, 276
MaeII	ACGT	1 cut(s)	535
MalI	GATC	2 cut(s)	297, 510
MboI	GATC	2 cut(s)	295, 508
MboII	GAAGA	5 cut(s)	77, 199, 428, 470, 664
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	6 cut(s)	35, 125, 408, 484, 600, 683
Mly113I	GGCGCC	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	452, 508
MnlI	CCTC	7 cut(s)	5, 274, 357, 588, 624, 637, 646
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	3 cut(s)	203, 668, 688
MspA1I	CMGCKG	2 cut(s)	261, 385
MspI	CCGG	3 cut(s)	314, 401, 618
MspR9I	CCNGG	4 cut(s)	271, 309, 582, 618
MvaI	CCWGG	3 cut(s)	271, 309, 582
MwoI	GCNNNNNNNGC	1 cut(s)	264
NarI	GGCGCC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	618
NdeII	GATC	2 cut(s)	295, 508
NlaIV	GGNNCC	2 cut(s)	93, 333
NmeAIII	GCCGAG	1 cut(s)	568
PaeR7I	CTCGAG	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	167, 395
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	4 cut(s)	96, 260, 263, 266
PleI	GAGTC	2 cut(s)	451, 508
PluTI	GGCGCC	1 cut(s)	335
PpsI	GAGTC	2 cut(s)	451, 508
Psp6I	CCWGG	3 cut(s)	269, 307, 580
PspGI	CCWGG	3 cut(s)	269, 307, 580
PspN4I	GGNNCC	2 cut(s)	93, 333
PspPI	GGNCC	3 cut(s)	131, 311, 633
PspXI	VCTCGAGB	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	3 cut(s)	19, 405, 571
RsaNI	GTAC	3 cut(s)	18, 404, 570
SaqAI	TTAA	3 cut(s)	203, 668, 688
SatI	GCNGC	4 cut(s)	95, 259, 262, 265
Sau3AI	GATC	2 cut(s)	295, 508
Sau96I	GGNCC	3 cut(s)	131, 311, 633
SchI	GAGTC	2 cut(s)	452, 508
ScrFI	CCNGG	4 cut(s)	271, 309, 582, 618
SduI	GDGCHC	1 cut(s)	625
SfoI	GGCGCC	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	628
SinI	GGWCC	1 cut(s)	311
SlaI	CTCGAG	1 cut(s)	628
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	6 cut(s)	35, 125, 408, 484, 600, 683
SsiI	CCGC	3 cut(s)	95, 194, 261
SspDI	GGCGCC	1 cut(s)	331
SspI	AATATT	1 cut(s)	465
StyD4I	CCNGG	4 cut(s)	269, 307, 580, 616
TaaI	ACNGT	3 cut(s)	208, 557, 569
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	3 cut(s)	362, 629, 681
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	6 cut(s)	35, 125, 408, 484, 600, 683
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	2 cut(s)	97, 264
TfiI	GAWTC	2 cut(s)	167, 395
Tru1I	TTAA	3 cut(s)	203, 668, 688
Tru9I	TTAA	3 cut(s)	203, 668, 688
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	2 cut(s)	258, 264
TspDTI	ATGAA	2 cut(s)	471, 495
TspRI	CASTG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	4 cut(s)	35, 408, 484, 683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.