Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006078

Physical Location & Seq

Genomic Coordinates Reverse (-)

7854788 .. 7855660

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG098500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTTCTGTTATTTATTATTCATTTATTTTAGGTTTATTAAAATTAGGGGAGTGACTCGAGTGAGTTGCCTAGGTAGTGGGCCCGGAATCCGGATCTTGATTGGTCGAGGTGGTATAAATAAGTTATTTGTTTTTGTCTTTTGGTTCAATGGAGGTGTGAAAGTTGCAGAGAGCACACGAGGGCCGGAGCAAACTGGAAAGCAAGTACACATTTTAAGTCTTCAGCTTTGGCTGCTTCGATTGCTTGGACTGTTCTTGTTCTTCTGCCACTCTGCTTTCTCACTCGGCTGCTGTGATAACCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.57

Weight (kDa)

9.79

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08035 AT1G08035 AT1G08035 AT2G28330
fragaria_vesca	FvH4_6g09290 FvH4_6g09290 FvH4_6g09290
malus_domestica	MD04G1179200.v1.1
prunus_persica	Prupe.6G299000_v2.0.a1
pyrus_communis	pycom04g15830
rosa_chinensis	RchiOBHm_Chr3g0459671
rosa_laevigata	RLG00000025068
rosa_multiflora	Rmu_co8248847.1_g000001 Rmu_sc0000240.1_g000020
rosa_roxburghii	Rroxscaffold_6G00420090
rosa_rugosa	Rorug03G0037000 Rorug03G0037100 Rorug03G0037200 Rorug03G0037300 Rorug03G0037400
rosa_samantha	Rh3AG095900 Rh3BG098400 Rh3BG098500 Rh3CG100400 Rh3DG099800
rosa_wichuraiana	Rw0G013770 Rw0G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	90
AclWI	GGATC	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw21I	GWGCWC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	57
Aor13HI	TCCGGA	1 cut(s)	90
AoxI	GGCC	2 cut(s)	80, 182
ApaI	GGGCCC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	232, 288
AspA2I	CCTAGG	1 cut(s)	70
AspS9I	GGNCC	3 cut(s)	80, 81, 182
AsuC2I	CCSGG	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	57
AvrII	CCTAGG	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	84
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	219, 275
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	233, 289
BlnI	CCTAGG	1 cut(s)	70
BlsI	GCNGC	2 cut(s)	234, 290
Bme1390I	CCNGG	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	3 cut(s)	80, 81, 182
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	219, 275
BshFI	GGCC	2 cut(s)	82, 184
BsiHKAI	GWGCWC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	84, 91, 185
BslI	CCNNNNNNNGG	1 cut(s)	90
BsnI	GGCC	2 cut(s)	82, 184
BsoBI	CYCGRG	1 cut(s)	57
Bsp120I	GGGCCC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	84, 176
Bsp13I	TCCGGA	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	93
BspANI	GGCC	2 cut(s)	82, 184
BspEI	TCCGGA	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	70
Bst2BI	CACGAG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	252
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 241
BstSCI	CCNGG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	219, 275
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	82, 184
Cfr13I	GGNCC	3 cut(s)	80, 81, 182
Csp6I	GTAC	1 cut(s)	206
CviJI	RGCY	5 cut(s)	82, 184, 226, 232, 288
CviKI_1	RGCY	5 cut(s)	82, 184, 226, 232, 288
CviQI	GTAC	1 cut(s)	206
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	70
FaiI	YATR	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	233, 289
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	233, 289
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	2 cut(s)	233, 289
HaeIII	GGCC	2 cut(s)	82, 184
HapII	CCGG	3 cut(s)	84, 91, 185
HinfI	GANTC	2 cut(s)	55, 87
HpaII	CCGG	3 cut(s)	84, 91, 185
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	91, 97
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 241
Kpn2I	TCCGGA	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	4 cut(s)	97, 104, 180, 198
Lsp1109I	GCAGC	2 cut(s)	219, 275
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	2 cut(s)	212, 253
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	84, 176
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	3 cut(s)	101, 146, 173
MroI	TCCGGA	1 cut(s)	90
MseI	TTAA	2 cut(s)	39, 215
MspI	CCGG	3 cut(s)	84, 91, 185
MspR9I	CCNGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	232, 241
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	93
NlaIV	GGNNCC	1 cut(s)	82
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	234, 290
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	82
PspOMI	GGGCCC	1 cut(s)	80
PspPI	GGNCC	3 cut(s)	80, 81, 182
PspXI	VCTCGAGB	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	39, 215
SatI	GCNGC	2 cut(s)	233, 289
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	3 cut(s)	80, 81, 182
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	84, 176
SetI	ASST	5 cut(s)	35, 76, 112, 157, 228
Sfr274I	CTCGAG	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	252
TaqI	TCGA	3 cut(s)	58, 106, 238
TasI	AATT	1 cut(s)	42
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	2 cut(s)	39, 215
Tru9I	TTAA	2 cut(s)	39, 215
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	232, 288
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	10
XhoI	CTCGAG	1 cut(s)	57
XmaJI	CCTAGG	1 cut(s)	70
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.