AT2G28330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006078
Physical Location & Seq
Reverse (-)
12099742 .. 12100757
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28330.1

Sequence Viewer

Length: 465 bp
ATGGAGCAAGAAGAACCATGTGAAGCGAAAGAAACAGCTTCTTCTTCGATAGAGCCGAAAACACCAAACCCTAATGTCCCAGATTCGATTCCTGCCATTGATTCCGATTCTTCTCTTTCGGAAGAAGAAATAGTTACAGAGAAAGACAGAGGAATCGTCACTTTGTCTCCACTGTGTAAACAGAGGATTGATTCTGCTTCGATCTCGGATTGTGTTTTGGTATCTGATGACGAAATTATAGAGTCTCTTTATCAGAATCTGTTGAGAGTTATTCTCTCATTGCAGCAGATTCAAAGTGTAGCTGTTGTTCCTGAGATTTGGTGTTTTGATGGTTGTAAAACACCGCCTCCTTCGTCTCGGAATCTCGATTCGAATATGGTTAGTGATACTTGTCCTGGAGCTCCTATGAAGCTCACTAAGATATCTAGGAATATTGATTCTGGATTAAGAAGAAAACTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.89

Weight (kDa)

4.45

Isoelectric Point (pI)

74.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 344
AgsI TTSAA 1 cut(s) 293
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 4 cut(s) 38, 302, 401, 412
AluI AGCT 4 cut(s) 38, 302, 401, 412
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 3 cut(s) 171, 249, 360
AlwNI CAGNNNCTG 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 371
BanII GRGCYC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 396
BcoDI GTCTC 3 cut(s) 171, 249, 360
BfaI CTAG 1 cut(s) 426
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 258, 290
BpmI CTGGAG 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 371
BsaXI ACNNNNNCTCC 4 cut(s) 151, 181, 331, 361
Bse3DI GCAATG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 403
BslFI GGGAC 1 cut(s) 62
BsmAI GTCTC 3 cut(s) 171, 249, 360
BsmBI CGTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 304
BspT104I TTCGAA 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 278
BssMI GATC 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 174
BstBI TTCGAA 1 cut(s) 371
BstDEI CTNAG 2 cut(s) 312, 417
BstKTI GATC 1 cut(s) 204
BstMAI GTCTC 3 cut(s) 171, 249, 360
BstMBI GATC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 394
BstV1I GCAGC 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 170
CaiI CAGNNNCTG 1 cut(s) 259
CviAII CATG 1 cut(s) 18
CviJI RGCY 5 cut(s) 38, 55, 302, 401, 412
CviKI_1 RGCY 5 cut(s) 38, 55, 302, 401, 412
DdeI CTNAG 2 cut(s) 312, 417
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 403
Eco32I GATATC 1 cut(s) 423
Eco53kI GAGCTC 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 394
EcoRV GATATC 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 403
Esp3I CGTCTC 1 cut(s) 360
FaeI CATG 1 cut(s) 21
FaiI YATR 4 cut(s) 19, 239, 377, 407
FaqI GGGAC 1 cut(s) 62
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 1 cut(s) 426
GluI GCNGC 1 cut(s) 284
GsuI CTGGAG 1 cut(s) 417
Hin1II CATG 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 7 cut(s) 106, 121, 208, 226, 255, 360, 464
Hpy188III TCNNGA 3 cut(s) 311, 365, 441
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 360
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 312, 417
Hsp92II CATG 1 cut(s) 21
Kzo9I GATC 1 cut(s) 201
LmnI GCTCC 3 cut(s) 4, 398, 406
LpnPI CCDG 6 cut(s) 93, 105, 324, 381, 408, 426
Lsp1109I GCAGC 1 cut(s) 295
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 2 cut(s) 133, 157
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 8 cut(s) 23, 33, 36, 102, 134, 137, 451, 462
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 1 cut(s) 234
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 3 cut(s) 143, 177, 357
MseI TTAA 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
NdeII GATC 1 cut(s) 201
NlaIII CATG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 157
NspV TTCGAA 1 cut(s) 371
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 394
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp124BI GAGCTC 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PsrI GAACNNNNNNTAC 2 cut(s) 291, 323
PstNI CAGNNNCTG 1 cut(s) 259
SacI GAGCTC 1 cut(s) 403
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 1 cut(s) 201
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 1 cut(s) 403
SetI ASST 4 cut(s) 40, 304, 403, 414
SfuI TTCGAA 1 cut(s) 371
Sse9I AATT 1 cut(s) 234
SsiI CCGC 1 cut(s) 344
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 1 cut(s) 403
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 5 cut(s) 47, 86, 200, 366, 371
TasI AATT 1 cut(s) 234
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 422
TspRI CASTG 1 cut(s) 177
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.