Rorug03G0037200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006078
Physical Location & Seq
Reverse (-)
2949279 .. 2949614
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0037200.1

Sequence Viewer

Length: 336 bp
ATGGGATTAAAGAAGATTGAAATCAAGAAAATAACGGATAAAAAATCCCTAAAGGTCACCTACTCTAAGAGGCGCAAAGGTCTGTTTCGCAAAGCCGATGACTTTTGCTCCAAAACCGGTGCTCAAATCGCCATTATCACCTTTTCACCGGGTATGAAGCCGATGACGTTTGGTCAACCTTCTGTAGAGTCCATCATAGATCGATATGAGCTCTGCGAACAAAGTTCAAATGTCGACGACAAAGAAATTCTTGATAAAGATGGTCATCATGGGGATGGTGAAGATTTAGATTTAGGAGCAAGACGAGAGAATAGAAGAGGTTGGTATGAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.72

Weight (kDa)

9.1

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 1.4e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AcsI RAATTY 1 cut(s) 246
AgeI ACCGGT 1 cut(s) 116
AgsI TTSAA 2 cut(s) 20, 228
AhdI GACNNNNNGTC 1 cut(s) 171
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw21I GWGCWC 2 cut(s) 124, 213
ApoI RAATTY 1 cut(s) 246
AsiGI ACCGGT 1 cut(s) 116
AspLEI GCGC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 4 cut(s) 49, 130, 138, 290
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 2 cut(s) 124, 213
BccI CCATC 3 cut(s) 200, 254, 269
BcnI CCSGG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 150
BmeRI GACNNNNNGTC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 202
BsaBI GATNNNNATC 2 cut(s) 20, 264
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bse118I RCCGGY 1 cut(s) 116
Bse8I GATNNNNATC 2 cut(s) 20, 264
BseCI ATCGAT 1 cut(s) 202
BseGI GGATG 1 cut(s) 280
BseJI GATNNNNATC 2 cut(s) 20, 264
BshTI ACCGGT 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 202
BsiHKAI GWGCWC 2 cut(s) 124, 213
BsiSI CCGG 2 cut(s) 117, 149
Bsp1286I GDGCHC 2 cut(s) 124, 213
Bsp143I GATC 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssMI GATC 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 66
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstPI GGTNACC 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 183
Bsu15I ATCGAT 1 cut(s) 202
BsuTUI ATCGAT 1 cut(s) 202
BtsCI GGATG 1 cut(s) 280
CfoI GCGC 1 cut(s) 75
Cfr10I RCCGGY 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 202
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 1 cut(s) 269
CviJI RGCY 3 cut(s) 95, 160, 211
CviKI_1 RGCY 3 cut(s) 95, 160, 211
DdeI CTNAG 1 cut(s) 66
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
DriI GACNNNNNGTC 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 310
Eam1105I GACNNNNNGTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
Eco91I GGTNACC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 1 cut(s) 272
FaiI YATR 5 cut(s) 155, 197, 207, 270, 327
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 1 cut(s) 268
FblI GTMKAC 1 cut(s) 234
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 213
GlaI GCGC 1 cut(s) 74
HapII CCGG 2 cut(s) 117, 149
HhaI GCGC 1 cut(s) 75
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 2 cut(s) 176, 235
HindII GTYRAC 2 cut(s) 176, 235
HinfI GANTC 1 cut(s) 188
HpaII CCGG 2 cut(s) 117, 149
HphI GGTGA 4 cut(s) 49, 130, 138, 290
Hpy166II GTNNAC 2 cut(s) 176, 235
Hpy188III TCNNGA 2 cut(s) 25, 251
Hpy8I GTNNAC 2 cut(s) 176, 235
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 113, 296
LpnPI CCDG 2 cut(s) 130, 162
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 3 cut(s) 25, 293, 327
MhlI GDGCHC 2 cut(s) 124, 213
MluCI AATT 1 cut(s) 246
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 2 cut(s) 63, 311
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 2 cut(s) 117, 149
MspR9I CCNGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 1 cut(s) 150
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 55
PinAI ACCGGT 1 cut(s) 116
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp124BI GAGCTC 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 213
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 2 cut(s) 124, 213
SetI ASST 8 cut(s) 57, 62, 82, 143, 170, 181, 213, 322
SfcI CTRYAG 1 cut(s) 183
SgeI CNNG 8 cut(s) 37, 129, 161, 162, 263, 281, 312, 317
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 1 cut(s) 246
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 170
TaqI TCGA 2 cut(s) 202, 234
TasI AATT 1 cut(s) 246
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 50
XapI RAATTY 1 cut(s) 246
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.