Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006078

Physical Location & Seq

Genomic Coordinates Forward (+)

27038088 .. 27039862

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1179200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGTTCTGGAGGTTGTACCAATGGACTGGAGGAATGCAAACTGCAACCTCCAAAAACTTTGGAAAAATCGGATAAAGCTAGTGTTTTGGGGCTTCATAAGGACGCTGCAGAGCCACCGGTTGAATTGGTTGCTAATGGGGTGGCTTCTCTAGAGCCTGTTACTCCTAATGCAGTCCGAGAGAACGGGGACTTACCTGTTGGTTTGAAATCTCCGCCCTCTGTTTGCAAGAAATCATCCAATGTAACTTGCTTGAATCCGAATGCTATCCGAAATGGGGACGACCCATTTGGTTGTTCTGATGATAGCAGCCCCAGGACACCGGTGGATGATGTCTTCGATCCTTTTGCCCCTGGTCGGGAAGACCTGGCTAAGGCGCCACAGTGCAAAAAATATGTCAGCAAGTGCAGGGGCATGGTTGCTCGTCAGCTTAACTTTGATTCTCCCGTCCAAATTTCAGAAGACGAGGTTTTGACTTATGTGGAATCCATTTCGGATGAAGAAATGTTTGAAGCTGTGTATAAAAACCTATTGGAAGCTATCGTGTCAGAGCAAACTGAGGGAGCTATTGCTGAACGCTCGAGGAAAGATTGCGTTTCTGATGACTGCGTAACACCTCGTCCAGAACCGCGTCAAACTGGAGCAGCTGAAACTTGTCCTGGGGCACCCCTGAGGCCATCAGGGAAGTCTAGGAACATCGATATGCGGTTAATCAGAAAGCTCGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

26.21

Weight (kDa)

4.88

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08035 AT1G08035 AT1G08035 AT2G28330
fragaria_vesca	FvH4_6g09290 FvH4_6g09290 FvH4_6g09290
malus_domestica	MD04G1179200.v1.1
prunus_persica	Prupe.6G299000_v2.0.a1
pyrus_communis	pycom04g15830
rosa_chinensis	RchiOBHm_Chr3g0459671
rosa_laevigata	RLG00000025068
rosa_multiflora	Rmu_co8248847.1_g000001 Rmu_sc0000240.1_g000020
rosa_roxburghii	Rroxscaffold_6G00420090
rosa_rugosa	Rorug03G0037000 Rorug03G0037100 Rorug03G0037200 Rorug03G0037300 Rorug03G0037400
rosa_samantha	Rh3AG095900 Rh3BG098400 Rh3BG098500 Rh3CG100400 Rh3DG099800
rosa_wichuraiana	Rw0G013770 Rw0G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	376, 664
AccII	CGCG	1 cut(s)	631
AciI	CCGC	3 cut(s)	215, 629, 706
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	4 cut(s)	277, 357, 358, 373
AgeI	ACCGGT	2 cut(s)	118, 322
AgsI	TTSAA	4 cut(s)	125, 208, 256, 512
AjnI	CCWGG	4 cut(s)	314, 352, 366, 658
AluBI	AGCT	7 cut(s)	80, 430, 515, 539, 566, 647, 721
AluI	AGCT	7 cut(s)	80, 430, 515, 539, 566, 647, 721
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	2 cut(s)	580, 722
AoxI	GGCC	1 cut(s)	674
ApeKI	GCWGC	3 cut(s)	107, 309, 644
ApoI	RAATTY	1 cut(s)	453
ArsI	GACNNNNNNTTYG	4 cut(s)	272, 304, 381, 413
AsiGI	ACCGGT	2 cut(s)	118, 322
AspLEI	GCGC	1 cut(s)	379
AvaI	CYCGRG	2 cut(s)	580, 722
AxyI	CCTNAGG	1 cut(s)	671
BaeGI	GKGCMC	1 cut(s)	667
BanI	GGYRCC	2 cut(s)	376, 664
BbsI	GAAGAC	3 cut(s)	328, 369, 468
BbvI	GCAGC	3 cut(s)	94, 321, 656
BccI	CCATC	1 cut(s)	685
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	4 cut(s)	316, 354, 368, 660
BfaI	CTAG	3 cut(s)	81, 152, 690
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	380
BisI	GCNGC	3 cut(s)	108, 310, 645
BlsI	GCNGC	3 cut(s)	109, 311, 646
Bme1390I	CCNGG	4 cut(s)	316, 354, 368, 660
BmeT110I	CYCGRG	2 cut(s)	580, 722
BmiI	GGNNCC	2 cut(s)	378, 666
BmrFI	CCNGG	4 cut(s)	316, 354, 368, 660
BpiI	GAAGAC	3 cut(s)	328, 369, 468
BpmI	CTGGAG	3 cut(s)	30, 50, 660
Bpu10I	CCTNAGC	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	699
BsaHI	GRCGYC	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	314, 352, 659
BsaWI	WCCGGW	2 cut(s)	118, 322
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 357, 358, 373
Bse118I	RCCGGY	2 cut(s)	118, 322
Bse1I	ACTGG	2 cut(s)	33, 643
Bse21I	CCTNAGG	1 cut(s)	671
BseBI	CCWGG	4 cut(s)	316, 354, 368, 660
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	3 cut(s)	314, 352, 659
BseGI	GGATG	3 cut(s)	236, 334, 502
BseLI	CCNNNNNNNGG	4 cut(s)	277, 357, 358, 373
BseMII	CTCAG	2 cut(s)	549, 662
BseNI	ACTGG	2 cut(s)	33, 643
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	94, 321, 656
BsgI	GTGCAG	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	631
BshFI	GGCC	1 cut(s)	676
BshNI	GGYRCC	2 cut(s)	376, 664
BshTI	ACCGGT	2 cut(s)	118, 322
BshVI	ATCGAT	1 cut(s)	699
BsiHKCI	CYCGRG	2 cut(s)	580, 722
BsiSI	CCGG	2 cut(s)	119, 323
BslFI	GGGAC	2 cut(s)	203, 293
BslI	CCNNNNNNNGG	4 cut(s)	277, 357, 358, 373
BsmFI	GGGAC	2 cut(s)	203, 293
BsmI	GAATGC	2 cut(s)	41, 268
BsnI	GGCC	1 cut(s)	676
BsoBI	CYCGRG	2 cut(s)	580, 722
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	3 cut(s)	215, 629, 706
BspANI	GGCC	1 cut(s)	676
BspCNI	CTCAG	2 cut(s)	550, 663
BspDI	ATCGAT	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	378, 666
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	335
BspT107I	GGYRCC	2 cut(s)	376, 664
BsrFI	RCCGGY	2 cut(s)	118, 322
BsrI	ACTGG	2 cut(s)	33, 643
BssAI	RCCGGY	2 cut(s)	118, 322
BssECI	CCNNGG	3 cut(s)	314, 352, 659
BssMI	GATC	1 cut(s)	340
BssNI	GRCGYC	1 cut(s)	377
Bst2UI	CCWGG	4 cut(s)	316, 354, 368, 660
Bst4CI	ACNGT	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	372, 558, 671
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	3 cut(s)	236, 334, 502
BstFNI	CGCG	1 cut(s)	631
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	340
BstNI	CCWGG	4 cut(s)	316, 354, 368, 660
BstSCI	CCNGG	4 cut(s)	314, 352, 366, 658
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	667
BstUI	CGCG	1 cut(s)	631
BstV1I	GCAGC	3 cut(s)	94, 321, 656
BstV2I	GAAGAC	3 cut(s)	328, 369, 468
BstXI	CCANNNNNNTGG	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	699
Bsu36I	CCTNAGG	1 cut(s)	671
BsuRI	GGCC	1 cut(s)	676
BsuTUI	ATCGAT	1 cut(s)	699
BtsCI	GGATG	3 cut(s)	236, 334, 502
BtsIMutI	CAGTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	379
Cfr10I	RCCGGY	2 cut(s)	118, 322
ClaI	ATCGAT	1 cut(s)	699
CseI	GACGC	2 cut(s)	113, 620
Csp6I	GTAC	1 cut(s)	18
CspAI	ACCGGT	2 cut(s)	118, 322
CviAII	CATG	1 cut(s)	415
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	3 cut(s)	372, 558, 671
DinI	GGCGCC	1 cut(s)	378
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	204
Eco81I	CCTNAGG	1 cut(s)	671
Eco88I	CYCGRG	2 cut(s)	580, 722
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRII	CCWGG	4 cut(s)	314, 352, 366, 658
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
FaeI	CATG	1 cut(s)	418
FaiI	YATR	6 cut(s)	99, 396, 416, 480, 522, 704
FaqI	GGGAC	2 cut(s)	203, 293
FatI	CATG	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	108, 310, 645
FokI	GGATG	3 cut(s)	223, 341, 509
Fsp4HI	GCNGC	3 cut(s)	108, 310, 645
FspBI	CTAG	3 cut(s)	81, 152, 690
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	3 cut(s)	108, 310, 645
GsuI	CTGGAG	3 cut(s)	30, 50, 660
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	676
HapII	CCGG	2 cut(s)	119, 323
HgaI	GACGC	2 cut(s)	113, 620
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	1 cut(s)	418
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	3 cut(s)	256, 440, 485
HpaII	CCGG	2 cut(s)	119, 323
Hpy188III	TCNNGA	4 cut(s)	9, 152, 359, 623
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4V	TGCA	7 cut(s)	39, 46, 110, 173, 228, 387, 408
HpyF3I	CTNAG	3 cut(s)	372, 558, 671
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	1 cut(s)	418
HspAI	GCGC	1 cut(s)	377
KasI	GGCGCC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	2 cut(s)	563, 641
Lsp1109I	GCAGC	3 cut(s)	94, 321, 656
MaeI	CTAG	3 cut(s)	81, 152, 690
MaeIII	GTNAC	3 cut(s)	160, 244, 610
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	4 cut(s)	328, 374, 473, 512
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	2 cut(s)	125, 453
Mly113I	GGCGCC	1 cut(s)	377
MnlI	CCTC	9 cut(s)	5, 25, 60, 229, 460, 553, 576, 627, 666
MseI	TTAA	2 cut(s)	432, 710
MslI	CAYNNNNRTG	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	2 cut(s)	119, 323
MspR9I	CCNGG	4 cut(s)	316, 354, 368, 660
Mva1269I	GAATGC	2 cut(s)	41, 268
MvaI	CCWGG	4 cut(s)	316, 354, 368, 660
MvnI	CGCG	1 cut(s)	631
NarI	GGCGCC	1 cut(s)	377
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	2 cut(s)	378, 666
PaeR7I	CTCGAG	2 cut(s)	580, 722
PctI	GAATGC	2 cut(s)	41, 268
PfeI	GAWTC	3 cut(s)	256, 440, 485
PinAI	ACCGGT	2 cut(s)	118, 322
PkrI	GCNGC	3 cut(s)	109, 311, 646
PluTI	GGCGCC	1 cut(s)	380
Psp6I	CCWGG	4 cut(s)	314, 352, 366, 658
PspGI	CCWGG	4 cut(s)	314, 352, 366, 658
PspN4I	GGNNCC	2 cut(s)	378, 666
PspXI	VCTCGAGB	2 cut(s)	580, 722
PstI	CTGCAG	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	701
SaqAI	TTAA	2 cut(s)	432, 710
SatI	GCNGC	3 cut(s)	108, 310, 645
Sau3AI	GATC	1 cut(s)	340
ScrFI	CCNGG	4 cut(s)	316, 354, 368, 660
SduI	GDGCHC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	108
SfoI	GGCGCC	1 cut(s)	378
Sfr274I	CTCGAG	2 cut(s)	580, 722
SgrAI	CRCCGGYG	1 cut(s)	322
SlaI	CTCGAG	2 cut(s)	580, 722
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	2 cut(s)	580, 722
SmoI	CTYRAG	2 cut(s)	580, 722
Sse9I	AATT	2 cut(s)	125, 453
SsiI	CCGC	3 cut(s)	215, 629, 706
SspDI	GGCGCC	1 cut(s)	376
SspMI	CTAG	3 cut(s)	81, 152, 690
StyD4I	CCNGG	4 cut(s)	314, 352, 366, 658
TaaI	ACNGT	1 cut(s)	384
TaqI	TCGA	4 cut(s)	339, 581, 699, 723
TasI	AATT	2 cut(s)	125, 453
TfiI	GAWTC	3 cut(s)	256, 440, 485
Tru1I	TTAA	2 cut(s)	432, 710
Tru9I	TTAA	2 cut(s)	432, 710
TscAI	CASTG	1 cut(s)	389
TseI	GCWGC	3 cut(s)	107, 309, 644
TspDTI	ATGAA	2 cut(s)	86, 513
TspRI	CASTG	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	453
XbaI	TCTAGA	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XhoI	CTCGAG	2 cut(s)	580, 722
XspI	CTAG	3 cut(s)	81, 152, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.