Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005849

Physical Location & Seq

Genomic Coordinates Reverse (-)

2564361 .. 2565318

Gene Structure 958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCTAAGCTTCTCGAGACCCTAGAAGAAGAAAAGACAGTAGAGCAGAAACCCAGAAGCCAAGAAGAAGAAGATCATCAAGATAGCTCGAAGAAAGAAGAGTTGTTAGAATCTCTGTGTACTCCAACTTCAAGTGATCACAAGATTCCGGAGGTGGAGACGTGTCCTCCGCCGCCAAGAAAGCGACCGCGTGAGATTTCTCTCACAAAGAAGACAAGATTGTCCAAAGATCTTCGGTTCTTTGAAGCCACCGACGTCGGGAGCCAAGAGGTAGAGACTTTATTTGTTCACGAACCAAACCATGTCCGTAAGAAACGAAGGAGTAATAGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.91

Weight (kDa)

6.11

Isoelectric Point (pI)

81.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08180
fragaria_vesca	FvH4_3g30440 FvH4_7g06790
prunus_persica	Prupe.2G095100_v2.0.a1 Prupe.6G114400_v2.0.a1
pyrus_communis	pycom02g20810
rosa_chinensis	RchiOBHm_Chr1g0336411 RchiOBHm_Chr5g0056381
rosa_laevigata	RLG00000029369 RLG00000035095
rosa_multiflora	Rmu_sc0000317.1_g000030 Rmu_sc0001981.1_g000058 Rmu_sc0003390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023920 Rroxscaffold_4G00315660
rosa_rugosa	Rorug01G0125600 Rorug05G0299300 Rorug05G0299300
rosa_samantha	Rh1AG145000 Rh1CG136400 Rh1DG151600 Rh5AG370100 Rh5BG381300 Rh5CG404400 Rh5DG394400
rosa_wichuraiana	Rw1G011880 Rw2G028370 Rw5G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
AatII	GACGTC	1 cut(s)	258
AccII	CGCG	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	3 cut(s)	170, 173, 188
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	258
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	132, 245
AjiI	CACGTC	1 cut(s)	162
AluBI	AGCT	2 cut(s)	10, 87
AluI	AGCT	2 cut(s)	10, 87
Alw26I	GTCTC	3 cut(s)	11, 152, 269
Ama87I	CYCGRG	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	112, 144
BbsI	GAAGAC	1 cut(s)	218
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	3 cut(s)	11, 152, 269
BfaI	CTAG	1 cut(s)	23
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	14
BmgBI	CACGTC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	3 cut(s)	151, 181, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
BseAI	TCCGGA	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	3 cut(s)	11, 152, 269
BsmBI	CGTCTC	1 cut(s)	152
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	14
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	73, 136, 229
BspACI	CCGC	3 cut(s)	170, 173, 188
BspEI	TCCGGA	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	11
BssMI	GATC	3 cut(s)	73, 136, 229
BssNI	GRCGYC	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	190
BstKTI	GATC	3 cut(s)	76, 139, 232
BstMAI	GTCTC	3 cut(s)	11, 152, 269
BstMBI	GATC	3 cut(s)	73, 136, 229
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstUI	CGCG	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	5 cut(s)	10, 60, 87, 248, 264
CviKI_1	RGCY	5 cut(s)	10, 60, 87, 248, 264
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	3 cut(s)	75, 138, 231
DpnII	GATC	3 cut(s)	73, 136, 229
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	1 cut(s)	305
FaiI	YATR	1 cut(s)	303
FatI	CATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	173
HapII	CCGG	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	110, 145
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	2 cut(s)	120, 289
Hpy188III	TCNNGA	6 cut(s)	14, 16, 80, 149, 259, 290
Hpy8I	GTNNAC	2 cut(s)	120, 289
Hpy99I	CGWCG	2 cut(s)	257, 260
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	161, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	2 cut(s)	161, 255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	305
Kpn2I	TCCGGA	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	73, 136, 229
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	2 cut(s)	67, 162
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	2 cut(s)	161, 255
MalI	GATC	3 cut(s)	75, 138, 231
MboI	GATC	3 cut(s)	73, 136, 229
MboII	GAAGA	9 cut(s)	38, 41, 77, 80, 83, 103, 110, 223, 224
MflI	RGATCY	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	145, 177, 262
MroI	TCCGGA	1 cut(s)	148
MspI	CCGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	181
NdeII	GATC	3 cut(s)	73, 136, 229
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	110, 145
PkrI	GCNGC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	3 cut(s)	73, 136, 229
SetI	ASST	6 cut(s)	12, 89, 156, 164, 258, 273
Sfr274I	CTCGAG	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SsiI	CCGC	3 cut(s)	170, 173, 188
SspMI	CTAG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	164, 258
TaqI	TCGA	2 cut(s)	15, 89
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	2 cut(s)	110, 145
TspGWI	ACGGA	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	14
XspI	CTAG	1 cut(s)	23
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.