Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005849

Physical Location & Seq

Genomic Coordinates Forward (+)

18826822 .. 18827157

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCCACTGGTCTGGACTTCTGCCAAGACCTCCCGAATCCAAGACTCCCCACCATCAAAATCTCAGCCCCACATCCACGACCGCAATCACCGGCATCCCATAGCGACGGTGACGTTGTCTCCGAGTGCGCCGAGACAAAGTCCCCACGATTCTTACACGTTCCCGCGATTCTTACATGTCCGCCTGCGCCGAGAAAGCCTGCCACAAGGGTGGTTTCCTCATGCAAGAGGAAACTCCAGTTCTTCGAGATCACAAACCGTGAAGAGGTCGAAGATATGTTCAGATCAAGCTTTTTGATCAACTCACAAGCCAAAAGGAGCTGCCCATGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.32

Weight (kDa)

8.88

Isoelectric Point (pI)

82.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08180
fragaria_vesca	FvH4_3g30440 FvH4_7g06790
prunus_persica	Prupe.2G095100_v2.0.a1 Prupe.6G114400_v2.0.a1
pyrus_communis	pycom02g20810
rosa_chinensis	RchiOBHm_Chr1g0336411 RchiOBHm_Chr5g0056381
rosa_laevigata	RLG00000029369 RLG00000035095
rosa_multiflora	Rmu_sc0000317.1_g000030 Rmu_sc0001981.1_g000058 Rmu_sc0003390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023920 Rroxscaffold_4G00315660
rosa_rugosa	Rorug01G0125600 Rorug05G0299300 Rorug05G0299300
rosa_samantha	Rh1AG145000 Rh1CG136400 Rh1DG151600 Rh5AG370100 Rh5BG381300 Rh5CG404400 Rh5DG394400
rosa_wichuraiana	Rw1G011880 Rw2G028370 Rw5G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AciI	CCGC	3 cut(s)	83, 165, 182
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	2 cut(s)	157, 176
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	2 cut(s)	291, 321
AluI	AGCT	2 cut(s)	291, 321
Alw26I	GTCTC	2 cut(s)	124, 128
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	321
AspLEI	GCGC	2 cut(s)	131, 190
AsuHPI	GGTGA	2 cut(s)	81, 122
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	1 cut(s)	62
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	124, 128
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
BmsI	GCATC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	13, 238
BseGI	GGATG	2 cut(s)	73, 95
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	13, 238
BseXI	GCAGC	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	167
Bsh1285I	CGRYCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	2 cut(s)	124, 128
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	249, 284, 297
BspACI	CCGC	3 cut(s)	83, 165, 182
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	13, 238
BssAI	RCCGGY	1 cut(s)	91
BssMI	GATC	3 cut(s)	249, 284, 297
Bst4CI	ACNGT	2 cut(s)	110, 260
Bst6I	CTCTTC	1 cut(s)	258
BstAUI	TGTACA	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	186, 201
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	73, 95
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	131, 190
BstKTI	GATC	3 cut(s)	252, 287, 300
BstMAI	GTCTC	2 cut(s)	124, 128
BstMBI	GATC	3 cut(s)	249, 284, 297
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	180
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	308
BstXI	CCANNNNNNTGG	2 cut(s)	13, 211
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	73, 95
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	2 cut(s)	186, 201
CfoI	GCGC	2 cut(s)	131, 190
Cfr10I	RCCGGY	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	3 cut(s)	177, 222, 327
CviJI	RGCY	6 cut(s)	5, 68, 199, 291, 311, 321
CviKI_1	RGCY	6 cut(s)	5, 68, 199, 291, 311, 321
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	3 cut(s)	251, 286, 299
DpnII	GATC	3 cut(s)	249, 284, 297
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	171
FaeI	CATG	3 cut(s)	180, 225, 330
FaiI	YATR	6 cut(s)	102, 178, 223, 278, 328, 334
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	3 cut(s)	176, 221, 326
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	2 cut(s)	60, 82
Fsp4HI	GCNGC	1 cut(s)	322
GlaI	GCGC	2 cut(s)	130, 189
GluI	GCNGC	1 cut(s)	322
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	2 cut(s)	131, 190
Hin1II	CATG	3 cut(s)	180, 225, 330
Hin6I	GCGC	2 cut(s)	129, 188
HinP1I	GCGC	2 cut(s)	129, 188
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	4 cut(s)	37, 45, 150, 169
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	2 cut(s)	81, 122
Hpy188I	TCNGA	2 cut(s)	124, 284
Hpy188III	TCNNGA	3 cut(s)	14, 34, 247
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	110, 260
HpyCH4IV	ACGT	2 cut(s)	114, 159
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	2 cut(s)	114, 159
Hsp92II	CATG	3 cut(s)	180, 225, 330
HspAI	GCGC	2 cut(s)	129, 188
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	249, 284, 297
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	4 cut(s)	105, 198, 213, 251
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	1 cut(s)	104
MaeII	ACGT	2 cut(s)	114, 159
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	3 cut(s)	251, 286, 299
MboI	GATC	3 cut(s)	249, 284, 297
MboII	GAAGA	3 cut(s)	235, 275, 284
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	41, 222, 229, 259
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	3 cut(s)	249, 284, 297
NlaIII	CATG	3 cut(s)	180, 225, 330
NmeAIII	GCCGAG	2 cut(s)	157, 216
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	180
OliI	CACNNNNGTG	1 cut(s)	209
PciI	ACATGT	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	37, 150, 169
PflFI	GACNNNGTC	2 cut(s)	116, 139
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PscI	ACATGT	1 cut(s)	176
PsyI	GACNNNGTC	2 cut(s)	116, 139
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	209
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	3 cut(s)	249, 284, 297
SchI	GAGTC	1 cut(s)	39
SetI	ASST	6 cut(s)	33, 117, 162, 270, 293, 323
SfaNI	GCATC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	209
SsiI	CCGC	3 cut(s)	83, 165, 182
TaaI	ACNGT	2 cut(s)	110, 260
TaiI	ACGT	2 cut(s)	117, 162
TaqI	TCGA	2 cut(s)	246, 270
TatI	WGTACW	1 cut(s)	329
TfiI	GAWTC	3 cut(s)	37, 150, 169
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	110
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	2 cut(s)	116, 139
XceI	RCATGY	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.