Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005849

Physical Location & Seq

Genomic Coordinates Forward (+)

40098409 .. 40099200

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCCACCACTGGTCTAGACTTGTGCCAAGACCTTCCATCCCTCATGCGATCACTCCCCTCCATCAAAATCCAAACCCCCAAACCTCAACCACAACAACAAGACGCCACAAACGACGCCGTCCTCGAAGACGAGTGCTGCCGCACCCCGAAGTCGGAAGCCAGCAAAATCCCGGCAGTAGTCACCTGCCCGCCAGCTCCCAGAAAGCCGAGAAGAGCTGCCGGCTCCTGCAAGAGGAAGCTGACGGAGCTGCAATTCTTCGAGCATGATCTGCGAGGAGAGAGAGGAGGTGGGGGTGATAGGGTAGATGAGAGGTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

8.34

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08180
fragaria_vesca	FvH4_3g30440 FvH4_7g06790
prunus_persica	Prupe.2G095100_v2.0.a1 Prupe.6G114400_v2.0.a1
pyrus_communis	pycom02g20810
rosa_chinensis	RchiOBHm_Chr1g0336411 RchiOBHm_Chr5g0056381
rosa_laevigata	RLG00000029369 RLG00000035095
rosa_multiflora	Rmu_sc0000317.1_g000030 Rmu_sc0001981.1_g000058 Rmu_sc0003390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023920 Rroxscaffold_4G00315660
rosa_rugosa	Rorug01G0125600 Rorug05G0299300 Rorug05G0299300
rosa_samantha	Rh1AG145000 Rh1CG136400 Rh1DG151600 Rh5AG370100 Rh5BG381300 Rh5CG404400 Rh5DG394400
rosa_wichuraiana	Rw1G011880 Rw2G028370 Rw5G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AciI	CCGC	2 cut(s)	142, 191
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	105, 117
AfiI	CCNNNNNNNGG	2 cut(s)	154, 234
AluBI	AGCT	4 cut(s)	197, 218, 241, 250
AluI	AGCT	4 cut(s)	197, 218, 241, 250
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	138, 218, 250
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	175, 308
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	125, 205, 237
BccI	CCATC	2 cut(s)	46, 71
BceAI	ACGGC	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	173
BfaI	CTAG	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	4 cut(s)	139, 142, 219, 251
BlsI	GCNGC	4 cut(s)	140, 143, 220, 252
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	173
BsaHI	GRCGYC	2 cut(s)	105, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 234
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	154, 234
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	2 cut(s)	291, 300
BseXI	GCAGC	3 cut(s)	125, 205, 237
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	173, 222
BslI	CCNNNNNNNGG	2 cut(s)	154, 234
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	50, 268
BspACI	CCGC	2 cut(s)	142, 191
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	221
BssMI	GATC	2 cut(s)	50, 268
BssNI	GRCGYC	2 cut(s)	105, 117
Bst6I	CTCTTC	1 cut(s)	208
BstACI	GRCGYC	2 cut(s)	105, 117
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstC8I	GCNNGC	4 cut(s)	163, 191, 195, 223
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	2 cut(s)	53, 271
BstMBI	GATC	2 cut(s)	50, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 271
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	125, 205, 237
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	4 cut(s)	163, 191, 195, 223
Cfr10I	RCCGGY	1 cut(s)	221
CseI	GACGC	2 cut(s)	113, 125
CviAII	CATG	2 cut(s)	46, 266
CviJI	RGCY	8 cut(s)	5, 161, 197, 208, 218, 225, 241, 250
CviKI_1	RGCY	8 cut(s)	5, 161, 197, 208, 218, 225, 241, 250
DpnI	GATC	2 cut(s)	52, 270
DpnII	GATC	2 cut(s)	50, 268
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	49, 269
FaiI	YATR	2 cut(s)	47, 267
FatI	CATG	2 cut(s)	45, 265
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	4 cut(s)	139, 142, 219, 251
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	139, 142, 219, 251
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	4 cut(s)	139, 142, 219, 251
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	173, 222
HgaI	GACGC	2 cut(s)	113, 125
Hin1I	GRCGYC	2 cut(s)	105, 117
Hin1II	CATG	2 cut(s)	49, 269
HpaII	CCGG	2 cut(s)	173, 222
HphI	GGTGA	2 cut(s)	175, 308
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	231, 253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 271
Hsp92I	GRCGYC	2 cut(s)	105, 117
Hsp92II	CATG	2 cut(s)	49, 269
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	50, 268
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	3 cut(s)	202, 230, 247
LpnPI	CCDG	7 cut(s)	175, 186, 199, 207, 214, 235, 241
Lsp1109I	GCAGC	3 cut(s)	125, 205, 237
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	52, 270
MboI	GATC	2 cut(s)	50, 268
MboII	GAAGA	3 cut(s)	140, 225, 250
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	9 cut(s)	53, 70, 96, 134, 228, 269, 278, 281, 306
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	173, 222
MspR9I	CCNGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	247, 271
NaeI	GCCGGC	1 cut(s)	223
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	2 cut(s)	50, 268
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	49, 269
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	181
PaqCI	CACCTGC	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 123
PdiI	GCCGGC	1 cut(s)	223
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	140, 143, 220, 252
PspN4I	GGNNCC	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	208
SatI	GCNGC	4 cut(s)	139, 142, 219, 251
Sau3AI	GATC	2 cut(s)	50, 268
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	9 cut(s)	36, 88, 188, 199, 220, 243, 252, 292, 317
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	2 cut(s)	142, 191
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	171
TaqI	TCGA	2 cut(s)	126, 261
TasI	AATT	1 cut(s)	254
TauI	GCSGC	1 cut(s)	144
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	138, 218, 250
Tsp45I	GTSAC	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	16
Tth111I	GACNNNGTC	1 cut(s)	119
XagI	CCTNNNNNAGG	1 cut(s)	232
XbaI	TCTAGA	1 cut(s)	16
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.