Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005849

Physical Location & Seq

Genomic Coordinates Forward (+)

60803487 .. 60804460

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035095

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCTAAAAGTATTGATCAGACATCTGATCACCAAGTTTCACCAGAATTCCATGAACAACCCCCTAAAGGTCTCGAGGAAGATGATGGTATTGAAGTGATTATTCAGGGATCAAATGACAAGCAGCTGGAAGAGTACTCATCGTGTCGAACACCTACCTCTTTTGATCACAGAATACCTACCATTCAGAGCTGCCCAGCCACACCGCGAAAGAAGCAAGGACGAGTTTTCTTGCATAAGAGAAAATTGGCATTCTCCGACTTCTTTGAAAGCACAAGCGGTGAAGAGGTAGAGTCCTTCTTTCAGTCGTGCTTTGAATCTCCTGCTAGTCCTAGGGTTAAGAAGAAGAGATGCACCATGCTAGAAGCAAAAGAGATCGTCCTTTGGATTCTATTCTGCGTGTCTTTCGCAAGAGGAGTAGCTCCAAAGCTAAAGGGCCTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.8

Weight (kDa)

6.9

Isoelectric Point (pI)

68.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08180
fragaria_vesca	FvH4_3g30440 FvH4_7g06790
prunus_persica	Prupe.2G095100_v2.0.a1 Prupe.6G114400_v2.0.a1
pyrus_communis	pycom02g20810
rosa_chinensis	RchiOBHm_Chr1g0336411 RchiOBHm_Chr5g0056381
rosa_laevigata	RLG00000029369 RLG00000035095
rosa_multiflora	Rmu_sc0000317.1_g000030 Rmu_sc0001981.1_g000058 Rmu_sc0003390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023920 Rroxscaffold_4G00315660
rosa_rugosa	Rorug01G0125600 Rorug05G0299300 Rorug05G0299300
rosa_samantha	Rh1AG145000 Rh1CG136400 Rh1DG151600 Rh5AG370100 Rh5BG381300 Rh5CG404400 Rh5DG394400
rosa_wichuraiana	Rw1G011880 Rw2G028370 Rw5G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	208
AciI	CCGC	2 cut(s)	206, 279
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	47
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	95, 269, 317
AluBI	AGCT	4 cut(s)	127, 192, 422, 430
AluI	AGCT	4 cut(s)	127, 192, 422, 430
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	2 cut(s)	124, 192
ApoI	RAATTY	1 cut(s)	47
AspA2I	CCTAGG	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	3 cut(s)	23, 33, 293
AvaI	CYCGRG	1 cut(s)	74
AvrII	CCTAGG	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	136, 179
BccI	CCATC	1 cut(s)	80
BclI	TGATCA	3 cut(s)	16, 28, 166
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	3 cut(s)	327, 333, 362
BisI	GCNGC	2 cut(s)	125, 193
BlnI	CCTAGG	1 cut(s)	332
BlsI	GCNGC	2 cut(s)	126, 194
BmcAI	AGTACT	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	436
BmsI	GCATC	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	429, 431
BseXI	GCAGC	2 cut(s)	136, 179
BseYI	CCCAGC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	438
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	74
Bsp143I	GATC	5 cut(s)	16, 28, 110, 166, 375
BspACI	CCGC	2 cut(s)	206, 279
BspANI	GGCC	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	5 cut(s)	16, 28, 110, 166, 375
BssT1I	CCWWGG	1 cut(s)	332
Bst6I	CTCTTC	3 cut(s)	126, 279, 341
BstFNI	CGCG	1 cut(s)	208
BstKTI	GATC	5 cut(s)	19, 31, 113, 169, 378
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	5 cut(s)	16, 28, 110, 166, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	136, 179
BsuRI	GGCC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	53, 358
CviJI	RGCY	6 cut(s)	127, 192, 200, 422, 430, 438
CviKI_1	RGCY	6 cut(s)	127, 192, 200, 422, 430, 438
CviQI	GTAC	1 cut(s)	136
DpnI	GATC	5 cut(s)	18, 30, 112, 168, 377
DpnII	GATC	5 cut(s)	16, 28, 110, 166, 375
Eam1104I	CTCTTC	3 cut(s)	126, 279, 341
EarI	CTCTTC	3 cut(s)	126, 279, 341
Eco130I	CCWWGG	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
FaeI	CATG	2 cut(s)	56, 361
FaiI	YATR	3 cut(s)	54, 237, 359
FatI	CATG	2 cut(s)	52, 357
FbaI	TGATCA	3 cut(s)	16, 28, 166
Fnu4HI	GCNGC	2 cut(s)	125, 193
Fsp4HI	GCNGC	2 cut(s)	125, 193
FspBI	CTAG	3 cut(s)	327, 333, 362
GluI	GCNGC	2 cut(s)	125, 193
GsaI	CCCAGC	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	438
Hin1II	CATG	2 cut(s)	56, 361
HinfI	GANTC	3 cut(s)	293, 317, 388
HphI	GGTGA	3 cut(s)	23, 33, 293
Hpy188I	TCNGA	4 cut(s)	21, 28, 189, 259
Hpy188III	TCNNGA	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	307
HpyCH4V	TGCA	2 cut(s)	235, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	56, 361
Ksp22I	TGATCA	3 cut(s)	16, 28, 166
Kzo9I	GATC	5 cut(s)	16, 28, 110, 166, 375
LmnI	GCTCC	1 cut(s)	427
LpnPI	CCDG	5 cut(s)	57, 92, 113, 210, 336
Lsp1109I	GCAGC	2 cut(s)	136, 179
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	3 cut(s)	327, 333, 362
MalI	GATC	5 cut(s)	18, 30, 112, 168, 377
MboI	GATC	5 cut(s)	16, 28, 110, 166, 375
MboII	GAAGA	5 cut(s)	92, 143, 296, 355, 358
MluCI	AATT	2 cut(s)	47, 245
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	70, 169, 280, 407
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	251
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeII	GATC	5 cut(s)	16, 28, 110, 166, 375
NlaIII	CATG	2 cut(s)	56, 361
PaeR7I	CTCGAG	1 cut(s)	74
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	317, 388
PkrI	GCNGC	2 cut(s)	126, 194
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	125, 193
Sau3AI	GATC	5 cut(s)	16, 28, 110, 166, 375
Sau96I	GGNCC	1 cut(s)	436
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	1 cut(s)	302
SetI	ASST	9 cut(s)	73, 129, 157, 161, 181, 194, 291, 424, 432
SfaNI	GCATC	1 cut(s)	341
Sfr274I	CTCGAG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	47, 245
SsiI	CCGC	2 cut(s)	206, 279
SspMI	CTAG	3 cut(s)	327, 333, 362
StyI	CCWWGG	1 cut(s)	332
TaqI	TCGA	2 cut(s)	75, 148
TasI	AATT	2 cut(s)	47, 245
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	317, 388
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseI	GCWGC	2 cut(s)	124, 192
TspDTI	ATGAA	1 cut(s)	69
XapI	RAATTY	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	332
XspI	CTAG	3 cut(s)	327, 333, 362
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.