Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005849

Physical Location & Seq

Genomic Coordinates Reverse (-)

45248225 .. 45248566

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCCACCACTGGTCTAGACTTGTGCCAAGACCTTCCATCCCTCATGCGATCACTCCCCTCCATCAAAATCCAAACCCCCAAACCTCAACCACAACAACAAGAAGCCACAAACAATGTCGTCCTCAAAGACGAGTGCTGCCGCACCCCAAAATCGGAAGCCACCAAAATTTTGGCAGTAGTCACCTGCCCATCGGCGCCCAGAAAGACAAGAAGAGCTGCCGGCTCCTGCAAGAGGAAGCTGACGGAGCTGCAATTCTTTAAGGTCGTGAATCGCGACGAACTGGGAAGGCACAGAGGAAGAAGAAGAGAGGAGGAGAGAGGTGGTGGAGAAGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.56

Weight (kDa)

9.82

Isoelectric Point (pI)

68.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08180
fragaria_vesca	FvH4_3g30440 FvH4_7g06790
prunus_persica	Prupe.2G095100_v2.0.a1 Prupe.6G114400_v2.0.a1
pyrus_communis	pycom02g20810
rosa_chinensis	RchiOBHm_Chr1g0336411 RchiOBHm_Chr5g0056381
rosa_laevigata	RLG00000029369 RLG00000035095
rosa_multiflora	Rmu_sc0000317.1_g000030 Rmu_sc0001981.1_g000058 Rmu_sc0003390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023920 Rroxscaffold_4G00315660
rosa_rugosa	Rorug01G0125600 Rorug05G0299300 Rorug05G0299300
rosa_samantha	Rh1AG145000 Rh1CG136400 Rh1DG151600 Rh5AG370100 Rh5BG381300 Rh5CG404400 Rh5DG394400
rosa_wichuraiana	Rw1G011880 Rw2G028370 Rw5G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	196
AccII	CGCG	1 cut(s)	276
AciI	CCGC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	154, 234
AluBI	AGCT	3 cut(s)	218, 241, 250
AluI	AGCT	3 cut(s)	218, 241, 250
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	138, 218, 250
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	125, 205, 237
BccI	CCATC	3 cut(s)	46, 71, 199
BfaI	CTAG	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	4 cut(s)	139, 142, 219, 251
BlsI	GCNGC	4 cut(s)	140, 143, 220, 252
BmiI	GGNNCC	2 cut(s)	198, 226
BmrI	ACTGGG	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 234
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	16, 288
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	154, 234
BseNI	ACTGG	2 cut(s)	16, 288
BseRI	GAGGAG	2 cut(s)	326, 329
BseXI	GCAGC	3 cut(s)	125, 205, 237
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	154, 234
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	50
Bsp68I	TCGCGA	1 cut(s)	276
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	198, 226
BspMI	ACCTGC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	16, 288
BssAI	RCCGGY	1 cut(s)	221
BssMI	GATC	1 cut(s)	50
BssNI	GRCGYC	1 cut(s)	197
Bst6I	CTCTTC	2 cut(s)	208, 301
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	125, 205, 237
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	9
BtuMI	TCGCGA	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	221
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	7 cut(s)	5, 107, 161, 218, 225, 241, 250
CviKI_1	RGCY	7 cut(s)	5, 107, 161, 218, 225, 241, 250
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	208, 301
EarI	CTCTTC	2 cut(s)	208, 301
EcoNI	CCTNNNNNAGG	1 cut(s)	232
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
FaeI	CATG	1 cut(s)	49
FaiI	YATR	1 cut(s)	47
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	139, 142, 219, 251
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	139, 142, 219, 251
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	4 cut(s)	139, 142, 219, 251
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	3 cut(s)	17, 268, 275
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	44, 282, 326
HpyCH4V	TGCA	2 cut(s)	231, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	197
KasI	GGCGCC	1 cut(s)	196
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	50
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	230, 247
LpnPI	CCDG	5 cut(s)	199, 214, 235, 241, 269
Lsp1109I	GCAGC	3 cut(s)	125, 205, 237
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	4 cut(s)	225, 312, 315, 318
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	168, 254
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	197
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	247
NaeI	GCCGGC	1 cut(s)	223
NarI	GGCGCC	1 cut(s)	197
NdeII	GATC	1 cut(s)	50
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	198, 226
NmuCI	GTSAC	1 cut(s)	181
NruI	TCGCGA	1 cut(s)	276
PaqCI	CACCTGC	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	4 cut(s)	140, 143, 220, 252
PluTI	GGCGCC	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	198, 226
RruI	TCGCGA	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	4 cut(s)	139, 142, 219, 251
Sau3AI	GATC	1 cut(s)	50
SetI	ASST	8 cut(s)	36, 88, 188, 220, 243, 252, 267, 325
SfoI	GGCGCC	1 cut(s)	198
Sse9I	AATT	2 cut(s)	168, 254
SsiI	CCGC	1 cut(s)	142
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	17
TasI	AATT	2 cut(s)	168, 254
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	138, 218, 250
Tsp45I	GTSAC	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	16
XagI	CCTNNNNNAGG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	168
XbaI	TCTAGA	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.