Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005849

Physical Location & Seq

Genomic Coordinates Reverse (-)

6803812 .. 6804162

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCCACCACTGGTCTAGACTTGTGCCAAGACCTTCCATCTCTCATGCGATCACTGCCCTCCATCAAAATCCAAACCCCCAAACCTCAACAACCACAACCACAAGACTCCATCACCACAAACGACGCCGTCCTCGAAGACGAGTGCTGCCGCACCCCCAAGTCGGAAGCCAGCAAAATCCCGGCAGTCGTCACCTGCCCGCCGGCACCCAGAAAGCCCAGAAGAGCTGCCGGCTCCTGCAAGAGGAAGCTGACCGAGCTGCAATTCTTCGAGGTCGTCAATCGCGACGAAGTCGAGGCCTTTTTCGGATCAACCGGTTTGTTCAACAAGAGGAGCTGCCCATGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.79

Weight (kDa)

8.75

Isoelectric Point (pI)

68.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08180
fragaria_vesca	FvH4_3g30440 FvH4_7g06790
prunus_persica	Prupe.2G095100_v2.0.a1 Prupe.6G114400_v2.0.a1
pyrus_communis	pycom02g20810
rosa_chinensis	RchiOBHm_Chr1g0336411 RchiOBHm_Chr5g0056381
rosa_laevigata	RLG00000029369 RLG00000035095
rosa_multiflora	Rmu_sc0000317.1_g000030 Rmu_sc0001981.1_g000058 Rmu_sc0003390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023920 Rroxscaffold_4G00315660
rosa_rugosa	Rorug01G0125600 Rorug05G0299300 Rorug05G0299300
rosa_samantha	Rh1AG145000 Rh1CG136400 Rh1DG151600 Rh5AG370100 Rh5BG381300 Rh5CG404400 Rh5DG394400
rosa_wichuraiana	Rw1G011880 Rw2G028370 Rw5G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	205
AccII	CGCG	1 cut(s)	285
AciI	CCGC	2 cut(s)	151, 200
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	163, 243
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	325
AluBI	AGCT	4 cut(s)	227, 250, 259, 336
AluI	AGCT	4 cut(s)	227, 250, 259, 336
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	2 cut(s)	3, 297
ApeKI	GCWGC	4 cut(s)	147, 227, 259, 336
AsiGI	ACCGGT	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	106, 184
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	4 cut(s)	134, 214, 246, 323
BccI	CCATC	3 cut(s)	46, 71, 119
BceAI	ACGGC	1 cut(s)	113
BcnI	CCSGG	1 cut(s)	182
BfaI	CTAG	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	203
BisI	GCNGC	5 cut(s)	148, 151, 228, 260, 337
BlsI	GCNGC	5 cut(s)	149, 152, 229, 261, 338
Bme1390I	CCNGG	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	207, 235
BmrFI	CCNGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 243
Bse118I	RCCGGY	3 cut(s)	202, 230, 314
Bse1I	ACTGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	163, 243
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	4 cut(s)	134, 214, 246, 323
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	5, 299
BshNI	GGYRCC	1 cut(s)	205
BshTI	ACCGGT	1 cut(s)	314
BsiSI	CCGG	4 cut(s)	182, 203, 231, 315
BslI	CCNNNNNNNGG	2 cut(s)	163, 243
BsnI	GGCC	2 cut(s)	5, 299
Bsp143I	GATC	2 cut(s)	50, 308
Bsp68I	TCGCGA	1 cut(s)	285
BspACI	CCGC	2 cut(s)	151, 200
BspANI	GGCC	2 cut(s)	5, 299
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	207, 235
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	316
BspQI	GCTCTTC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	205
BsrFI	RCCGGY	3 cut(s)	202, 230, 314
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	3 cut(s)	202, 230, 314
BssMI	GATC	2 cut(s)	50, 308
BssNI	GRCGYC	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	4 cut(s)	172, 200, 204, 232
BstENI	CCTNNNNNAGG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	285
BstKTI	GATC	2 cut(s)	53, 311
BstMBI	GATC	2 cut(s)	50, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 256
BstSCI	CCNGG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	4 cut(s)	134, 214, 246, 323
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	5, 299
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	9, 53
BtuMI	TCGCGA	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	4 cut(s)	172, 200, 204, 232
Cfr10I	RCCGGY	3 cut(s)	202, 230, 314
CseI	GACGC	1 cut(s)	134
CspAI	ACCGGT	1 cut(s)	314
CviAII	CATG	2 cut(s)	46, 342
CviJI	RGCY	9 cut(s)	5, 170, 217, 227, 234, 250, 259, 299, 336
CviKI_1	RGCY	9 cut(s)	5, 170, 217, 227, 234, 250, 259, 299, 336
DpnI	GATC	2 cut(s)	52, 310
DpnII	GATC	2 cut(s)	50, 308
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	299
EcoNI	CCTNNNNNAGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	49, 345
FaiI	YATR	2 cut(s)	47, 343
FatI	CATG	2 cut(s)	45, 341
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	5 cut(s)	148, 151, 228, 260, 337
Fsp4HI	GCNGC	5 cut(s)	148, 151, 228, 260, 337
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	5 cut(s)	148, 151, 228, 260, 337
HaeIII	GGCC	2 cut(s)	5, 299
HapII	CCGG	4 cut(s)	182, 203, 231, 315
HgaI	GACGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	49, 345
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	4 cut(s)	182, 203, 231, 315
HphI	GGTGA	2 cut(s)	106, 184
Hpy188I	TCNGA	2 cut(s)	166, 308
Hpy188III	TCNNGA	2 cut(s)	17, 284
Hpy99I	CGWCG	2 cut(s)	128, 290
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	240, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 256
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	49, 345
KroI	GCCGGC	2 cut(s)	202, 230
KroNI	GCCGGC	2 cut(s)	204, 232
Kzo9I	GATC	2 cut(s)	50, 308
LguI	GCTCTTC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	239, 333
LpnPI	CCDG	9 cut(s)	184, 195, 208, 216, 223, 232, 244, 250, 328
Lsp1109I	GCAGC	4 cut(s)	134, 214, 246, 323
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	52, 310
MboI	GATC	2 cut(s)	50, 308
MboII	GAAGA	3 cut(s)	149, 234, 259
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	7 cut(s)	70, 96, 143, 237, 265, 289, 324
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	2 cut(s)	202, 230
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	182, 203, 231, 315
MspR9I	CCNGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	55, 256
NaeI	GCCGGC	2 cut(s)	204, 232
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	2 cut(s)	50, 308
NgoMIV	GCCGGC	2 cut(s)	202, 230
NlaIII	CATG	2 cut(s)	49, 345
NlaIV	GGNNCC	2 cut(s)	207, 235
NmuCI	GTSAC	1 cut(s)	190
NruI	TCGCGA	1 cut(s)	285
PaqCI	CACCTGC	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 282
PdiI	GCCGGC	2 cut(s)	204, 232
PflFI	GACNNNGTC	2 cut(s)	128, 290
PinAI	ACCGGT	1 cut(s)	314
PkrI	GCNGC	5 cut(s)	149, 152, 229, 261, 338
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	207, 235
PsyI	GACNNNGTC	2 cut(s)	128, 290
RruI	TCGCGA	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	217
SatI	GCNGC	5 cut(s)	148, 151, 228, 260, 337
Sau3AI	GATC	2 cut(s)	50, 308
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	8 cut(s)	36, 88, 197, 229, 252, 261, 276, 338
Sse9I	AATT	1 cut(s)	263
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	2 cut(s)	151, 200
SspMI	CTAG	1 cut(s)	17
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	180
TaqI	TCGA	3 cut(s)	135, 270, 294
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	263
TauI	GCSGC	1 cut(s)	153
TscAI	CASTG	2 cut(s)	16, 60
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	147, 227, 259, 336
Tsp45I	GTSAC	1 cut(s)	190
TspRI	CASTG	2 cut(s)	16, 60
Tth111I	GACNNNGTC	2 cut(s)	128, 290
XagI	CCTNNNNNAGG	1 cut(s)	241
XbaI	TCTAGA	1 cut(s)	16
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.