Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005849

Physical Location & Seq

Genomic Coordinates Reverse (-)

8252098 .. 8253212

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G114400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCTGAAGATCCTAAAGCTTCAGATCAACACCAAGTTCTATCAATATTTCATGATCACCAACAACCGCCACAAGGTCTCAAGGAGAAAGATGATAACAGTGAACCAATTATTCGAAAGGAAGGGGATGATTGTCGAACACCGACCTCTCGTGATCACAAGATACCTACCATTCAAAGCTGCCCAACCACACCAAGAAAAAAAGGACAAGCCTTTGTGTGCAAGAGGAAATTAGCAGTGTTCGATTTCTTCGAACGCACCGGGCGTGAAGAGGTAGAGTCCTTCTTTCGCTCTTGCTTTGAATCTCCTAGTCCTAGGGTTAAGAAGAGATGTACCAGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

13.15

Weight (kDa)

8.65

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08180
fragaria_vesca	FvH4_3g30440 FvH4_7g06790
prunus_persica	Prupe.2G095100_v2.0.a1 Prupe.6G114400_v2.0.a1
pyrus_communis	pycom02g20810
rosa_chinensis	RchiOBHm_Chr1g0336411 RchiOBHm_Chr5g0056381
rosa_laevigata	RLG00000029369 RLG00000035095
rosa_multiflora	Rmu_sc0000317.1_g000030 Rmu_sc0001981.1_g000058 Rmu_sc0003390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023920 Rroxscaffold_4G00315660
rosa_rugosa	Rorug01G0125600 Rorug05G0299300 Rorug05G0299300
rosa_samantha	Rh1AG145000 Rh1CG136400 Rh1DG151600 Rh5AG370100 Rh5BG381300 Rh5CG404400 Rh5DG394400
rosa_wichuraiana	Rw1G011880 Rw2G028370 Rw5G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	6, 27
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	176, 302
AluBI	AGCT	2 cut(s)	20, 180
AluI	AGCT	2 cut(s)	20, 180
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	180
AspA2I	CCTAGG	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	50
AsuII	TTCGAA	2 cut(s)	115, 252
AvrII	CCTAGG	1 cut(s)	314
BauI	CACGAG	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	167
BclI	TGATCA	2 cut(s)	55, 154
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	2 cut(s)	309, 315
BisI	GCNGC	1 cut(s)	181
BlnI	CCTAGG	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	262
Bpu14I	TTCGAA	2 cut(s)	115, 252
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	83
Bsp119I	TTCGAA	2 cut(s)	115, 252
Bsp143I	GATC	4 cut(s)	10, 25, 55, 154
BspACI	CCGC	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	52
BspPI	GGATC	1 cut(s)	5
BspT104I	TTCGAA	2 cut(s)	115, 252
BspTNI	GGTCTC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	4 cut(s)	10, 25, 55, 154
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	2 cut(s)	264, 320
BstBI	TTCGAA	2 cut(s)	115, 252
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	4 cut(s)	13, 28, 58, 157
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	4 cut(s)	10, 25, 55, 154
BstSCI	CCNGG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	106, 243
CciI	TCATGA	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	4 cut(s)	5, 20, 180, 212
CviKI_1	RGCY	4 cut(s)	5, 20, 180, 212
CviQI	GTAC	1 cut(s)	333
DpnI	GATC	4 cut(s)	12, 27, 57, 156
DpnII	GATC	4 cut(s)	10, 25, 55, 154
Eam1104I	CTCTTC	2 cut(s)	264, 320
EarI	CTCTTC	2 cut(s)	264, 320
Eco130I	CCWWGG	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	83
Eco57I	CTGAAG	2 cut(s)	6, 27
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	1 cut(s)	56
FaiI	YATR	3 cut(s)	54, 341, 343
FatI	CATG	1 cut(s)	52
FbaI	TGATCA	2 cut(s)	55, 154
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	2 cut(s)	309, 315
GluI	GCNGC	1 cut(s)	181
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	2 cut(s)	278, 302
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	53, 152
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	116, 292
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	56
Ksp22I	TGATCA	2 cut(s)	55, 154
Kzo9I	GATC	4 cut(s)	10, 25, 55, 154
LpnPI	CCDG	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	309, 315
MalI	GATC	4 cut(s)	12, 27, 57, 156
MboI	GATC	4 cut(s)	10, 25, 55, 154
MboII	GAAGA	4 cut(s)	20, 241, 281, 337
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	2 cut(s)	108, 230
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	157, 219, 265
MseI	TTAA	1 cut(s)	321
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	262
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	4 cut(s)	10, 25, 55, 154
NlaIII	CATG	1 cut(s)	56
NspV	TTCGAA	2 cut(s)	115, 252
PagI	TCATGA	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 262
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	4 cut(s)	10, 25, 55, 154
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	262
SetI	ASST	6 cut(s)	22, 79, 149, 169, 182, 276
SfuI	TTCGAA	2 cut(s)	115, 252
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	108, 230
SsiI	CCGC	1 cut(s)	68
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	2 cut(s)	309, 315
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	4 cut(s)	115, 136, 243, 252
TasI	AATT	2 cut(s)	108, 230
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	106, 243
TseI	GCWGC	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	106, 243
XmaJI	CCTAGG	1 cut(s)	314
XspI	CTAG	2 cut(s)	309, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.