Rh5AG370100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005849
Physical Location & Seq
Forward (+)
62679187 .. 62680365
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG370100.1

Sequence Viewer

Length: 366 bp
ATGTCTAAAAGTATTGATCAGACATCTGATCACCAAGTTTCACCAGAATTCCATGAACAAGCCCCTAAAGGTCTCGAGGAAGATGATGGTATTGAAGTGATTATTCAGGGATCAAATGACAAGCAGCTGGAAGAGTACTCATCGTGTCGAACACCTACCTCTTTTGATCACAGAATACCTACCATTCAGAGCTGCCCAGCCACACCGCGAAAGAAGCAAGGACGAGTTTTCTTGCATAAGAGAAAATTGGCGTTCCCCGACTTCTTTGAAAGCACAAGCGGTGAAGAGGTAGAGTCCTTCTTTCAGTCGTGCTTTGAATCTCCTGCTAGTCCTAGGGTTAAGAAGAAGAGATGCACCAGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.75

Weight (kDa)

6.08

Isoelectric Point (pI)

78.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 208
AciI CCGC 2 cut(s) 206, 279
AclWI GGATC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 47
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 3 cut(s) 95, 269, 317
AluBI AGCT 2 cut(s) 127, 192
AluI AGCT 2 cut(s) 127, 192
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 124, 192
ApoI RAATTY 1 cut(s) 47
AspA2I CCTAGG 1 cut(s) 332
AsuHPI GGTGA 3 cut(s) 23, 33, 293
AvaI CYCGRG 1 cut(s) 74
AvrII CCTAGG 1 cut(s) 332
BbvI GCAGC 2 cut(s) 136, 179
BccI CCATC 1 cut(s) 80
BclI TGATCA 3 cut(s) 16, 28, 166
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 327, 333
BisI GCNGC 2 cut(s) 125, 193
BlnI CCTAGG 1 cut(s) 332
BlsI GCNGC 2 cut(s) 126, 194
BmcAI AGTACT 1 cut(s) 137
BmeT110I CYCGRG 1 cut(s) 74
BmsI GCATC 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 136, 179
BseYI CCCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 74
Bsp143I GATC 4 cut(s) 16, 28, 110, 166
BspACI CCGC 2 cut(s) 206, 279
BspFNI CGCG 1 cut(s) 208
BspPI GGATC 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 4 cut(s) 16, 28, 110, 166
BssT1I CCWWGG 1 cut(s) 332
Bst6I CTCTTC 3 cut(s) 126, 279, 341
BstFNI CGCG 1 cut(s) 208
BstKTI GATC 4 cut(s) 19, 31, 113, 169
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 4 cut(s) 16, 28, 110, 166
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 136, 179
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 53
CviJI RGCY 4 cut(s) 62, 127, 192, 200
CviKI_1 RGCY 4 cut(s) 62, 127, 192, 200
CviQI GTAC 1 cut(s) 136
DpnI GATC 4 cut(s) 18, 30, 112, 168
DpnII GATC 4 cut(s) 16, 28, 110, 166
Eam1104I CTCTTC 3 cut(s) 126, 279, 341
EarI CTCTTC 3 cut(s) 126, 279, 341
Eco130I CCWWGG 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 1 cut(s) 56
FaiI YATR 4 cut(s) 54, 237, 362, 364
FatI CATG 1 cut(s) 52
FbaI TGATCA 3 cut(s) 16, 28, 166
Fnu4HI GCNGC 2 cut(s) 125, 193
Fsp4HI GCNGC 2 cut(s) 125, 193
FspBI CTAG 2 cut(s) 327, 333
GluI GCNGC 2 cut(s) 125, 193
GsaI CCCAGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 56
HinfI GANTC 2 cut(s) 293, 317
HphI GGTGA 3 cut(s) 23, 33, 293
Hpy188I TCNGA 3 cut(s) 21, 28, 189
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 235, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
Hsp92II CATG 1 cut(s) 56
Ksp22I TGATCA 3 cut(s) 16, 28, 166
Kzo9I GATC 4 cut(s) 16, 28, 110, 166
LpnPI CCDG 5 cut(s) 57, 92, 113, 210, 336
Lsp1109I GCAGC 2 cut(s) 136, 179
LweI GCATC 1 cut(s) 341
MaeI CTAG 2 cut(s) 327, 333
MalI GATC 4 cut(s) 18, 30, 112, 168
MboI GATC 4 cut(s) 16, 28, 110, 166
MboII GAAGA 5 cut(s) 92, 143, 296, 355, 358
MluCI AATT 2 cut(s) 47, 245
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 3 cut(s) 70, 169, 280
MseI TTAA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 127
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 214
NdeII GATC 4 cut(s) 16, 28, 110, 166
NlaIII CATG 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 74
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 2 cut(s) 126, 194
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 2 cut(s) 125, 193
Sau3AI GATC 4 cut(s) 16, 28, 110, 166
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 302
SetI ASST 7 cut(s) 73, 129, 157, 161, 181, 194, 291
SfaNI GCATC 1 cut(s) 341
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 47, 245
SsiI CCGC 2 cut(s) 206, 279
SspMI CTAG 2 cut(s) 327, 333
StyI CCWWGG 1 cut(s) 332
TaqI TCGA 2 cut(s) 75, 148
TasI AATT 2 cut(s) 47, 245
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseI GCWGC 2 cut(s) 124, 192
TspDTI ATGAA 1 cut(s) 69
XapI RAATTY 1 cut(s) 47
XhoI CTCGAG 1 cut(s) 74
XmaJI CCTAGG 1 cut(s) 332
XspI CTAG 2 cut(s) 327, 333
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.