Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005849

Physical Location & Seq

Genomic Coordinates Forward (+)

37301441 .. 37302330

Gene Structure 890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCCACCACTGGTCTAGACTTGTGCCAAGACCTTCCATCCCTCATGCGATCACTCCCCTCCATCAAAATCCAAACCCCCAAACCTCAACCACAACAACAAGACGCCACAAACGACGCCGTCCTCGAAGACGAGTGCTGCCGCACCCCGAAATCGGAAGCCAGCAAAATCCCGGCAGTCGTCACCTGCCCGCCGGCGCCCAGAAAGCCAAGAAGAGCTGCCGGCTCCTGCAAGAGGAAGCTGACGGAACTGCAATTCTTCGAGGTCGTGAATCGCGACGAAGTCGATGCCTTTTTCGGATCAACTGGTTTGTTCAACAAGAGGAGCTGCCCATTGGTTGTTGGCTATCAAGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.05

Weight (kDa)

8.25

Isoelectric Point (pI)

62.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08180
fragaria_vesca	FvH4_3g30440 FvH4_7g06790
prunus_persica	Prupe.2G095100_v2.0.a1 Prupe.6G114400_v2.0.a1
pyrus_communis	pycom02g20810
rosa_chinensis	RchiOBHm_Chr1g0336411 RchiOBHm_Chr5g0056381
rosa_laevigata	RLG00000029369 RLG00000035095
rosa_multiflora	Rmu_sc0000317.1_g000030 Rmu_sc0001981.1_g000058 Rmu_sc0003390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023920 Rroxscaffold_4G00315660
rosa_rugosa	Rorug01G0125600 Rorug05G0299300 Rorug05G0299300
rosa_samantha	Rh1AG145000 Rh1CG136400 Rh1DG151600 Rh5AG370100 Rh5BG381300 Rh5CG404400 Rh5DG394400
rosa_wichuraiana	Rw1G011880 Rw2G028370 Rw5G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	196
AccII	CGCG	1 cut(s)	276
AciI	CCGC	2 cut(s)	142, 191
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	3 cut(s)	105, 117, 197
AfiI	CCNNNNNNNGG	2 cut(s)	154, 234
AgsI	TTSAA	1 cut(s)	316
AluBI	AGCT	3 cut(s)	218, 241, 327
AluI	AGCT	3 cut(s)	218, 241, 327
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	138, 218, 327
AspLEI	GCGC	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	125, 205, 314
BccI	CCATC	3 cut(s)	46, 71, 347
BceAI	ACGGC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BcnI	CCSGG	1 cut(s)	173
BfaI	CTAG	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	4 cut(s)	139, 142, 219, 328
BlsI	GCNGC	4 cut(s)	140, 143, 220, 329
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	198, 226
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	173
BsaHI	GRCGYC	3 cut(s)	105, 117, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 234
Bse118I	RCCGGY	2 cut(s)	193, 221
Bse1I	ACTGG	2 cut(s)	16, 310
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	154, 234
BseNI	ACTGG	2 cut(s)	16, 310
BseRI	GAGGAG	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	125, 205, 314
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	173, 194, 222
BslI	CCNNNNNNNGG	2 cut(s)	154, 234
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	50, 299
Bsp68I	TCGCGA	1 cut(s)	276
BspACI	CCGC	2 cut(s)	142, 191
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	198, 226
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	196
BsrFI	RCCGGY	2 cut(s)	193, 221
BsrI	ACTGG	2 cut(s)	16, 310
BssAI	RCCGGY	2 cut(s)	193, 221
BssMI	GATC	2 cut(s)	50, 299
BssNI	GRCGYC	3 cut(s)	105, 117, 197
Bst6I	CTCTTC	1 cut(s)	208
BstACI	GRCGYC	3 cut(s)	105, 117, 197
BstC8I	GCNNGC	4 cut(s)	163, 191, 195, 223
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	53, 302
BstMBI	GATC	2 cut(s)	50, 299
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	125, 205, 314
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	9
BtuMI	TCGCGA	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	4 cut(s)	163, 191, 195, 223
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	2 cut(s)	193, 221
CseI	GACGC	2 cut(s)	113, 125
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	8 cut(s)	5, 161, 208, 218, 225, 241, 327, 345
CviKI_1	RGCY	8 cut(s)	5, 161, 208, 218, 225, 241, 327, 345
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	2 cut(s)	52, 301
DpnII	GATC	2 cut(s)	50, 299
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	232
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
FaeI	CATG	1 cut(s)	49
FaiI	YATR	1 cut(s)	47
FatI	CATG	1 cut(s)	45
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	4 cut(s)	139, 142, 219, 328
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	139, 142, 219, 328
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	4 cut(s)	139, 142, 219, 328
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	173, 194, 222
HgaI	GACGC	2 cut(s)	113, 125
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	3 cut(s)	105, 117, 197
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	3 cut(s)	173, 194, 222
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	157, 299
Hpy188III	TCNNGA	4 cut(s)	17, 268, 275, 350
Hpy99I	CGWCG	2 cut(s)	119, 281
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	231, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
Hsp92I	GRCGYC	3 cut(s)	105, 117, 197
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	197
KasI	GGCGCC	1 cut(s)	196
KroI	GCCGGC	2 cut(s)	193, 221
KroNI	GCCGGC	2 cut(s)	195, 223
Kzo9I	GATC	2 cut(s)	50, 299
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	230, 324
LpnPI	CCDG	8 cut(s)	175, 186, 199, 207, 214, 235, 241, 291
Lsp1109I	GCAGC	3 cut(s)	125, 205, 314
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	52, 301
MboI	GATC	2 cut(s)	50, 299
MboII	GAAGA	3 cut(s)	140, 225, 250
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	197
MnlI	CCTC	7 cut(s)	53, 70, 96, 134, 228, 256, 315
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	193
MroNI	GCCGGC	2 cut(s)	193, 221
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	173, 194, 222
MspR9I	CCNGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	205
NaeI	GCCGGC	2 cut(s)	195, 223
NarI	GGCGCC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	2 cut(s)	50, 299
NgoMIV	GCCGGC	2 cut(s)	193, 221
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	198, 226
NmuCI	GTSAC	1 cut(s)	181
NruI	TCGCGA	1 cut(s)	276
PaqCI	CACCTGC	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 123, 273
PdiI	GCCGGC	2 cut(s)	195, 223
PfeI	GAWTC	1 cut(s)	271
PflFI	GACNNNGTC	2 cut(s)	119, 281
PkrI	GCNGC	4 cut(s)	140, 143, 220, 329
PluTI	GGCGCC	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	198, 226
PsyI	GACNNNGTC	2 cut(s)	119, 281
RruI	TCGCGA	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	208
SatI	GCNGC	4 cut(s)	139, 142, 219, 328
Sau3AI	GATC	2 cut(s)	50, 299
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	7 cut(s)	36, 88, 188, 220, 243, 267, 329
SfaNI	GCATC	1 cut(s)	277
SfoI	GGCGCC	1 cut(s)	198
SgrAI	CRCCGGYG	1 cut(s)	193
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	2 cut(s)	142, 191
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	171
TaqI	TCGA	3 cut(s)	126, 261, 285
TasI	AATT	1 cut(s)	254
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	271
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	138, 218, 327
Tsp45I	GTSAC	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	16
Tth111I	GACNNNGTC	2 cut(s)	119, 281
XagI	CCTNNNNNAGG	1 cut(s)	232
XbaI	TCTAGA	1 cut(s)	16
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.