Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Forward (+)

2684176 .. 2685702

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGAGATTCGGAGTCATTTGTTGGGAAAAATTGGAATGGATTGAAGGATTTCTGGAGTGATAGGTTATCATTTTTCGAAAATTACACCAGATTCACCAAACGCGACGCGCCTCTTCCTTCTTGGTCTTCCTCCGACGTCGAGGAATTCATTGCCTCCGATCCCGTTCATGGACCCACCCTGAAAACGGCTAGGGAAGCTGTGACGTTTGGTGTTACCGGAGCTGCACTTGGAGCTGTCTCTACTGCTGCTTTTGCCTGGAAATACTCCAGGAGTCCACATGGTGCTGCATTGTCCTTCTTAGGAGGAGGTGTTTTTGGTTGGACCTTTGGGCAAGAGGTCGCCAACCACACACTGCAACTCTACAAGTTGGACACAATGGCAGCCCAAGTTAAGTTCATGGAATGGTGGGAACGTAAGTCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

142

Amino Acids

15.81

Weight (kDa)

6.28

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccII	CGCG	2 cut(s)	105, 110
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	170, 187
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	257, 269
AluBI	AGCT	3 cut(s)	200, 224, 236
AluI	AGCT	3 cut(s)	200, 224, 236
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	155
ApeKI	GCWGC	4 cut(s)	224, 248, 287, 383
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	173, 324
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	78
AvaII	GGWCC	2 cut(s)	173, 324
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	4 cut(s)	211, 235, 274, 395
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	2 cut(s)	259, 271
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	4 cut(s)	225, 249, 288, 384
BlsI	GCNGC	4 cut(s)	226, 250, 289, 385
Bme1390I	CCNGG	2 cut(s)	259, 271
Bme18I	GGWCC	2 cut(s)	173, 324
BmgT120I	GGNCC	2 cut(s)	173, 324
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	259, 271
BpiI	GAAGAC	1 cut(s)	120
BpmI	CTGGAG	2 cut(s)	76, 253
Bpu14I	TTCGAA	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 187
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	259, 271
BseLI	CCNNNNNNNGG	2 cut(s)	170, 187
BseMI	GCAATG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	4 cut(s)	211, 235, 274, 395
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	2 cut(s)	105, 110
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	170, 187
BsmAI	GTCTC	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	160
BspFNI	CGCG	2 cut(s)	105, 110
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	150
BssMI	GATC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	259, 271
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	138
BstBI	TTCGAA	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	301
BstFNI	CGCG	2 cut(s)	105, 110
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 233, 254
BstNI	CCWGG	2 cut(s)	259, 271
BstSCI	CCNGG	2 cut(s)	257, 269
BstUI	CGCG	2 cut(s)	105, 110
BstV1I	GCAGC	4 cut(s)	211, 235, 274, 395
BstV2I	GAAGAC	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	353
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	173, 324
CseI	GACGC	1 cut(s)	116
CviAII	CATG	3 cut(s)	170, 281, 400
CviJI	RGCY	5 cut(s)	191, 200, 224, 236, 386
CviKI_1	RGCY	5 cut(s)	191, 200, 224, 236, 386
DdeI	CTNAG	1 cut(s)	301
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DraIII	CACNNNGTG	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	173, 324
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	257, 269
FaeI	CATG	3 cut(s)	173, 284, 403
FaiI	YATR	3 cut(s)	171, 282, 401
FatI	CATG	3 cut(s)	169, 280, 399
Fnu4HI	GCNGC	4 cut(s)	225, 249, 288, 384
Fsp4HI	GCNGC	4 cut(s)	225, 249, 288, 384
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	4 cut(s)	225, 249, 288, 384
GsuI	CTGGAG	2 cut(s)	76, 253
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	173, 284, 403
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	4 cut(s)	8, 14, 93, 274
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	3 cut(s)	13, 136, 160
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	278
Hpy99I	CGWCG	3 cut(s)	110, 140, 143
HpyAV	CCTTC	3 cut(s)	40, 129, 307
HpyCH4IV	ACGT	3 cut(s)	138, 206, 415
HpyCH4V	TGCA	3 cut(s)	227, 290, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 233, 254
HpyF3I	CTNAG	1 cut(s)	301
HpySE526I	ACGT	3 cut(s)	138, 206, 415
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	173, 284, 403
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	221, 233
LpnPI	CCDG	8 cut(s)	40, 103, 194, 232, 244, 256, 271, 283
Lsp1109I	GCAGC	4 cut(s)	211, 235, 274, 395
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	3 cut(s)	138, 206, 415
MaeIII	GTNAC	2 cut(s)	202, 214
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	107, 120
MluCI	AATT	3 cut(s)	31, 82, 146
MlyI	GAGTC	2 cut(s)	23, 283
MmeI	TCCRAC	3 cut(s)	159, 302, 351
MnlI	CCTC	7 cut(s)	123, 136, 142, 166, 299, 302, 331
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	393
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	259, 271
MvaI	CCWGG	2 cut(s)	259, 271
MvnI	CGCG	2 cut(s)	105, 110
MwoI	GCNNNNNNNGC	3 cut(s)	197, 233, 254
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	3 cut(s)	173, 284, 403
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	8, 93
PfoI	TCCNGGA	1 cut(s)	269
PkrI	GCNGC	4 cut(s)	226, 250, 289, 385
PleI	GAGTC	2 cut(s)	22, 282
PpsI	GAGTC	2 cut(s)	22, 282
Psp6I	CCWGG	2 cut(s)	257, 269
PspGI	CCWGG	2 cut(s)	257, 269
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	2 cut(s)	173, 324
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	4 cut(s)	225, 249, 288, 384
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	2 cut(s)	173, 324
SchI	GAGTC	2 cut(s)	23, 283
ScrFI	CCNGG	2 cut(s)	259, 271
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	2 cut(s)	173, 324
Sse9I	AATT	3 cut(s)	31, 82, 146
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	257, 269
TaiI	ACGT	3 cut(s)	141, 209, 418
TaqI	TCGA	2 cut(s)	78, 141
TasI	AATT	3 cut(s)	31, 82, 146
TfiI	GAWTC	2 cut(s)	8, 93
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	4 cut(s)	224, 248, 287, 383
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	139, 158, 388
TspRI	CASTG	1 cut(s)	360
VpaK11BI	GGWCC	2 cut(s)	173, 324
XapI	RAATTY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	192
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.