Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Forward (+)

42453605 .. 42472042

Gene Structure 18438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG358700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGTGAGTTCGTTACAAAGCACTGGGAGGGCTTCAAGGATTTCTGGGGCGAAAGGTTCTCCTTCCTCGATCACTATTCCAAGTTCATCAAGCGTGACAAGCCTCTTCCCTCTTGGTCCGACTCTGATGTCGAAGCTTTCATTGCTTCTGATCCCATTCACGGCCCCGCTCTGAAGACAGCTAGGGAAGCAGCGAAATTTGCCGTTACAGGAAGTGCTATTGGAGCTGTATCAACTGCTGGATTTGCATGGAAATATTCAAGGAGCTTGCATGATTTGCAGGTGAAGAGGTCGGAGGAGGTGAGGGAGTCGTGGCGGCCGGGGGAGGCAGGGGGAGAAAAGAATGGGAGGGCGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

119

Amino Acids

13.32

Weight (kDa)

8.02

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	271
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	271
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	3 cut(s)	168, 316, 353
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	37, 261
AluBI	AGCT	4 cut(s)	137, 182, 227, 267
AluI	AGCT	4 cut(s)	137, 182, 227, 267
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	2 cut(s)	163, 317
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	117, 164
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	3 cut(s)	17, 295, 313
AvaII	GGWCC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	203
BceAI	ACGGC	2 cut(s)	178, 188
BcnI	CCSGG	1 cut(s)	321
BfaI	CTAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	271
BisI	GCNGC	3 cut(s)	192, 317, 354
BlsI	GCNGC	3 cut(s)	193, 318, 355
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	117, 164
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	311
BseX3I	CGGCCG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	165, 319
BsiEI	CGRYCG	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	161
BsnI	GGCC	2 cut(s)	165, 319
Bsp143I	GATC	2 cut(s)	70, 151
BspACI	CCGC	3 cut(s)	168, 316, 353
BspANI	GGCC	2 cut(s)	165, 319
BspLI	GGNNCC	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	2 cut(s)	70, 151
Bst6I	CTCTTC	2 cut(s)	111, 281
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	73, 154
BstMBI	GATC	2 cut(s)	70, 151
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	7 cut(s)	100, 143, 188, 200, 224, 245, 277
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	182
BstZI	CGGCCG	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	165, 319
BtsIMutI	CAGTG	1 cut(s)	22
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	117, 164
CviAII	CATG	2 cut(s)	249, 272
CviJI	RGCY	8 cut(s)	33, 103, 137, 165, 182, 227, 267, 319
CviKI_1	RGCY	8 cut(s)	33, 103, 137, 165, 182, 227, 267, 319
DpnI	GATC	2 cut(s)	72, 153
DpnII	GATC	2 cut(s)	70, 151
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	317
EagI	CGGCCG	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	111, 281
EarI	CTCTTC	2 cut(s)	111, 281
EclXI	CGGCCG	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	117
Eco52I	CGGCCG	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	194
FaeI	CATG	2 cut(s)	252, 275
FaiI	YATR	3 cut(s)	250, 273, 358
FatI	CATG	2 cut(s)	248, 271
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	192, 317, 354
Fsp4HI	GCNGC	3 cut(s)	192, 317, 354
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	3 cut(s)	192, 317, 354
HaeIII	GGCC	2 cut(s)	165, 319
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	2 cut(s)	252, 275
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	2 cut(s)	122, 308
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	3 cut(s)	17, 295, 313
Hpy188I	TCNGA	5 cut(s)	121, 127, 151, 174, 295
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	248, 271, 280
HpyF10VI	GCNNNNNNNGC	7 cut(s)	100, 143, 188, 200, 224, 245, 277
Hsp92II	CATG	2 cut(s)	252, 275
Kzo9I	GATC	2 cut(s)	70, 151
LmnI	GCTCC	2 cut(s)	224, 264
LpnPI	CCDG	7 cut(s)	10, 31, 195, 225, 266, 315, 333
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	13, 95, 205
MalI	GATC	2 cut(s)	72, 153
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	2 cut(s)	70, 151
MboII	GAAGA	3 cut(s)	98, 187, 298
MluCI	AATT	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	116, 317
MmeI	TCCRAC	2 cut(s)	144, 273
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	7 cut(s)	100, 143, 188, 200, 224, 245, 277
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	70, 151
NlaIII	CATG	2 cut(s)	252, 275
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	95
PaqCI	CACCTGC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	193, 318, 355
PleI	GAGTC	2 cut(s)	116, 316
PpsI	GAGTC	2 cut(s)	116, 316
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	117, 164
SatI	GCNGC	3 cut(s)	192, 317, 354
Sau3AI	GATC	2 cut(s)	70, 151
Sau96I	GGNCC	2 cut(s)	117, 164
SchI	GAGTC	2 cut(s)	116, 317
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	8 cut(s)	59, 139, 184, 229, 269, 285, 293, 303
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	3 cut(s)	168, 316, 353
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	319
TaqI	TCGA	2 cut(s)	69, 132
TasI	AATT	1 cut(s)	197
TauI	GCSGC	2 cut(s)	319, 356
TscAI	CASTG	1 cut(s)	29
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	76, 130
TspRI	CASTG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.