Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001677.1

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Forward (+)

99833 .. 103241

Gene Structure 3409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001677.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgggtgagttcgttacaaagcactgggagggcttcaaggatttctggggcgaaaggttctccttcctcgatcactattccaagttcatcaagcgtgacaagcctcttccctcttggtccgactctgatgtcgaagccttcattgcttccgatcccattcacggccccgcactgaagacagctagggaagcagcaaaatttgccgttacaggaagtgctattggagctgtatcaaccgctggatttgcatggaaatattcaaggagtttgcatggttctggactggcttttttggctggaggtgtctttggttggacatttggacaggaaattgcaaaccactcgcttcaactttacaggtttgacaccttggctgcacaaactaagttcctggaatggtggcaagacaagagtgagcgacggtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

142

Amino Acids

16.03

Weight (kDa)

8.02

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AciI	CCGC	2 cut(s)	168, 237
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	37, 261, 350
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	2 cut(s)	182, 227
AluI	AGCT	2 cut(s)	182, 227
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	191, 374
ApoI	RAATTY	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	117, 164
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	203, 361
BceAI	ACGGC	2 cut(s)	178, 188
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BciT130I	CCWGG	1 cut(s)	392
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	192, 375
BlsI	GCNGC	2 cut(s)	193, 376
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	117, 164
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	29, 288
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	29, 288
BseXI	GCAGC	2 cut(s)	203, 361
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	161
BsnI	GGCC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	70, 151
BspACI	CCGC	2 cut(s)	168, 237
BspANI	GGCC	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	29, 288
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	2 cut(s)	70, 151
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	384
BstKTI	GATC	2 cut(s)	73, 154
BstMBI	GATC	2 cut(s)	70, 151
BstMWI	GCNNNNNNNGC	7 cut(s)	100, 143, 188, 200, 224, 245, 293
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	203, 361
BstV2I	GAAGAC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	22, 170
Cfr13I	GGNCC	2 cut(s)	117, 164
CviAII	CATG	2 cut(s)	249, 272
CviJI	RGCY	9 cut(s)	33, 103, 137, 165, 182, 227, 287, 296, 374
CviKI_1	RGCY	9 cut(s)	33, 103, 137, 165, 182, 227, 287, 296, 374
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	2 cut(s)	72, 153
DpnII	GATC	2 cut(s)	70, 151
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	2 cut(s)	252, 275
FaiI	YATR	2 cut(s)	250, 273
FatI	CATG	2 cut(s)	248, 271
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	192, 375
Fsp4HI	GCNGC	2 cut(s)	192, 375
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	2 cut(s)	192, 375
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	252, 275
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	3 cut(s)	121, 127, 151
Hpy188III	TCNNGA	1 cut(s)	279
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	2 cut(s)	73, 148
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	248, 271, 335, 377
HpyF10VI	GCNNNNNNNGC	7 cut(s)	100, 143, 188, 200, 224, 245, 293
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	252, 275
Kzo9I	GATC	2 cut(s)	70, 151
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	2 cut(s)	203, 361
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	13, 95, 205
MalI	GATC	2 cut(s)	72, 153
MboI	GATC	2 cut(s)	70, 151
MboII	GAAGA	2 cut(s)	98, 187
MluCI	AATT	2 cut(s)	197, 330
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	144, 293
MnlI	CCTC	5 cut(s)	22, 77, 114, 121, 293
MseI	TTAA	1 cut(s)	427
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	7 cut(s)	100, 143, 188, 200, 224, 245, 293
NdeII	GATC	2 cut(s)	70, 151
NlaIII	CATG	2 cut(s)	252, 275
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	193, 376
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	117, 164
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	2 cut(s)	192, 375
Sau3AI	GATC	2 cut(s)	70, 151
Sau96I	GGNCC	2 cut(s)	117, 164
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	392
SetI	ASST	6 cut(s)	59, 184, 229, 304, 362, 371
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	2 cut(s)	197, 330
SsiI	CCGC	2 cut(s)	168, 237
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	423
TaqI	TCGA	2 cut(s)	69, 132
TasI	AATT	2 cut(s)	197, 330
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TscAI	CASTG	2 cut(s)	29, 177
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	2 cut(s)	191, 374
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	76, 130
TspRI	CASTG	2 cut(s)	29, 177
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.