Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Forward (+)

47275919 .. 47280063

Gene Structure 4145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG345100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGTGAGTTCGTTACAAAGCACTGGGAGGGCTTCAAGGATTTCTGGGGCGAAAGGTTCTCCTTCCTCGATCACTATTCCAAGTTCATCAAGCGTGACAAGCCTCTTCCCTCTTGGTCCGACTCTGATGTCGAAGCCTTCATTGCTTCCGATCCCATTCACGGCCCCGCTCTGAAGACAGCTAGGGAAGCAGCGAAATTTGCCGTTACAGGAAGTGCTATTGGAGCTGTATCAACTGCTGGATTTGCATGGAAATATTCAAGGAGCTTGCATGGTAATGTACTTCCTCTTCTTTTCATGGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

102

Amino Acids

11.42

Weight (kDa)

8.06

Isoelectric Point (pI)

19.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	37, 261
AluBI	AGCT	3 cut(s)	182, 227, 267
AluI	AGCT	3 cut(s)	182, 227, 267
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	117, 164
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	117
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	203
BceAI	ACGGC	2 cut(s)	178, 188
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	117, 164
BmiI	GGNNCC	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	161
BsnI	GGCC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	70, 151
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	70, 151
Bst6I	CTCTTC	2 cut(s)	111, 294
BstC8I	GCNNGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	73, 154
BstMBI	GATC	2 cut(s)	70, 151
BstMWI	GCNNNNNNNGC	6 cut(s)	100, 143, 188, 200, 224, 245
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	117, 164
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	3 cut(s)	249, 272, 298
CviJI	RGCY	7 cut(s)	33, 103, 137, 165, 182, 227, 267
CviKI_1	RGCY	7 cut(s)	33, 103, 137, 165, 182, 227, 267
CviQI	GTAC	1 cut(s)	281
DpnI	GATC	2 cut(s)	72, 153
DpnII	GATC	2 cut(s)	70, 151
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	2 cut(s)	111, 294
EarI	CTCTTC	2 cut(s)	111, 294
Eco47I	GGWCC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	194
FaeI	CATG	3 cut(s)	252, 275, 301
FaiI	YATR	3 cut(s)	250, 273, 299
FatI	CATG	3 cut(s)	248, 271, 297
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	165
Hin1II	CATG	3 cut(s)	252, 275, 301
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	121, 127, 151, 174
HpyAV	CCTTC	2 cut(s)	73, 148
HpyCH4V	TGCA	2 cut(s)	248, 271
HpyF10VI	GCNNNNNNNGC	6 cut(s)	100, 143, 188, 200, 224, 245
Hsp92II	CATG	3 cut(s)	252, 275, 301
Kzo9I	GATC	2 cut(s)	70, 151
LmnI	GCTCC	2 cut(s)	224, 264
LpnPI	CCDG	4 cut(s)	10, 31, 195, 225
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	13, 95, 205
MalI	GATC	2 cut(s)	72, 153
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	2 cut(s)	70, 151
MboII	GAAGA	3 cut(s)	98, 187, 281
MluCI	AATT	2 cut(s)	197, 304
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	5 cut(s)	22, 77, 114, 121, 297
MseI	TTAA	2 cut(s)	303, 307
MslI	CAYNNNNRTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	6 cut(s)	100, 143, 188, 200, 224, 245
NdeII	GATC	2 cut(s)	70, 151
NlaIII	CATG	3 cut(s)	252, 275, 301
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	95
PacI	TTAATTAA	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	117, 164
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	303, 307
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	70, 151
Sau96I	GGNCC	2 cut(s)	117, 164
SchI	GAGTC	1 cut(s)	116
SetI	ASST	4 cut(s)	59, 184, 229, 269
SinI	GGWCC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	197, 304
SsiI	CCGC	1 cut(s)	168
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	1 cut(s)	183
TaqI	TCGA	2 cut(s)	69, 132
TasI	AATT	2 cut(s)	197, 304
TatI	WGTACW	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	303, 307
Tru9I	TTAA	2 cut(s)	303, 307
TscAI	CASTG	1 cut(s)	29
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	76, 130, 286
TspRI	CASTG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.