Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Forward (+)

19885891 .. 19888639

Gene Structure 2749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGTATTAGAAATGCGTGGATCTTCATCGTCATCACCTCAGTTCGTTACAAATCGCTTCAAGGATTTCTGGGGTTCATCAAGCGTGATAGGCCTCTTCCCTCTTGGTCCCACTCTGATGTTCAAGCCTTCATTGCTTCTGATCCCGTTCATGGTCCCGCTGAAGTATTATTGGAGCAGTATCAACTTCTTGATTTGCGTGGAGATATTCAAGGAGTTTACATGGTTCTTGTCTGGCTTTTTTGGCCGGAGGTATCTTTGGTTGGACATTTGGGCAGGAAATTGCCGGAGCAGATTCAGTGCACCGTGAAACATGTAGAACATGGGGAGTTGAACAATTTCCATATCTCAAGCAAGTCAAACAGCCGCCGGATTCGTCGGAATTCATTTCGAAACACCGGCTTCGCAGAGATTCCGGCCGACTATTCTTTCTTCTTATTCGGCTATGGGAAAAACTATAACCATGAAGAGATCACCCGACGAGGAGAGGAAGTGGAAGGCGGTGGTCCACCTCCGAGACCGGAGGAGGAAGAAGATATCGCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

183

Amino Acids

20.88

Weight (kDa)

6.16

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	159, 367, 501
AclWI	GGATC	2 cut(s)	29, 137
AcoI	YGGCCR	2 cut(s)	245, 417
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	4 cut(s)	62, 125, 212, 334
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	511
Alw44I	GTGCAC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	29, 137
AoxI	GGCC	3 cut(s)	92, 245, 417
ApaLI	GTGCAC	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	382
Asp700I	GAANNNNTTC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	108, 155, 506
AsuHPI	GGTGA	2 cut(s)	28, 466
AsuII	TTCGAA	1 cut(s)	391
AvaII	GGWCC	3 cut(s)	108, 155, 506
BaeGI	GKGCMC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	511
BisI	GCNGC	1 cut(s)	367
BlsI	GCNGC	1 cut(s)	368
Bme18I	GGWCC	3 cut(s)	108, 155, 506
BmgT120I	GGNCC	3 cut(s)	108, 155, 506
BmiI	GGNNCC	2 cut(s)	110, 157
Bpu14I	TTCGAA	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse118I	RCCGGY	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	498, 539
BseSI	GKGCMC	1 cut(s)	305
BseX3I	CGGCCG	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	3 cut(s)	94, 247, 419
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	6 cut(s)	248, 287, 370, 399, 416, 521
BslFI	GGGAC	2 cut(s)	94, 141
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	511
BsmFI	GGGAC	2 cut(s)	94, 141
BsnI	GGCC	3 cut(s)	94, 247, 419
Bso31I	GGTCTC	1 cut(s)	511
Bsp119I	TTCGAA	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	3 cut(s)	21, 142, 471
BspACI	CCGC	3 cut(s)	159, 367, 501
BspANI	GGCC	3 cut(s)	94, 247, 419
BspCNI	CTCAG	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	110, 157
BspPI	GGATC	2 cut(s)	29, 137
BspT104I	TTCGAA	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	398
BssAI	RCCGGY	1 cut(s)	398
BssMI	GATC	3 cut(s)	21, 142, 471
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	2 cut(s)	102, 462
BstBI	TTCGAA	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	40
BstKTI	GATC	3 cut(s)	24, 145, 474
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	3 cut(s)	21, 142, 471
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 134, 244
BstNSI	RCATGY	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BstZI	CGGCCG	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	94, 247, 419
BtsIMutI	CAGTG	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	108, 155, 506
CviAII	CATG	5 cut(s)	152, 223, 314, 323, 464
CviJI	RGCY	8 cut(s)	94, 128, 238, 247, 366, 402, 419, 444
CviKI_1	RGCY	8 cut(s)	94, 128, 238, 247, 366, 402, 419, 444
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	23, 144, 473
DpnII	GATC	3 cut(s)	21, 142, 471
EaeI	YGGCCR	2 cut(s)	245, 417
EagI	CGGCCG	1 cut(s)	417
Eam1104I	CTCTTC	2 cut(s)	102, 462
EarI	CTCTTC	2 cut(s)	102, 462
EclXI	CGGCCG	1 cut(s)	417
Eco147I	AGGCCT	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	3 cut(s)	108, 155, 506
Eco52I	CGGCCG	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	538
FaeI	CATG	5 cut(s)	155, 226, 317, 326, 467
FaiI	YATR	8 cut(s)	153, 224, 315, 324, 345, 447, 459, 465
FaqI	GGGAC	2 cut(s)	94, 141
FatI	CATG	5 cut(s)	151, 222, 313, 322, 463
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	367
GluI	GCNGC	1 cut(s)	367
HaeIII	GGCC	3 cut(s)	94, 247, 419
HapII	CCGG	6 cut(s)	248, 287, 370, 399, 416, 521
Hin1II	CATG	5 cut(s)	155, 226, 317, 326, 467
HinfI	GANTC	3 cut(s)	295, 373, 412
HpaII	CCGG	6 cut(s)	248, 287, 370, 399, 416, 521
HphI	GGTGA	2 cut(s)	28, 466
Hpy166II	GTNNAC	3 cut(s)	220, 303, 509
Hpy188I	TCNGA	4 cut(s)	118, 142, 381, 516
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	3 cut(s)	220, 303, 509
Hpy99I	CGWCG	2 cut(s)	381, 483
HpyAV	CCTTC	2 cut(s)	139, 491
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 134, 244
HpyF3I	CTNAG	1 cut(s)	40
Hsp92II	CATG	5 cut(s)	155, 226, 317, 326, 467
Kzo9I	GATC	3 cut(s)	21, 142, 471
LmnI	GCTCC	2 cut(s)	175, 289
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	3 cut(s)	23, 144, 473
MboI	GATC	3 cut(s)	21, 142, 471
MboII	GAAGA	6 cut(s)	16, 89, 424, 479, 542, 545
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	3 cut(s)	281, 337, 382
MmeI	TCCRAC	2 cut(s)	244, 359
MnlI	CCTC	9 cut(s)	49, 105, 112, 244, 476, 481, 517, 520, 522
MroXI	GAANNNNTTC	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	6 cut(s)	248, 287, 370, 399, 416, 521
MwoI	GCNNNNNNNGC	3 cut(s)	91, 134, 244
NdeII	GATC	3 cut(s)	21, 142, 471
NlaIII	CATG	5 cut(s)	155, 226, 317, 326, 467
NlaIV	GGNNCC	2 cut(s)	110, 157
NspI	RCATGY	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	391
PceI	AGGCCT	1 cut(s)	94
PciI	ACATGT	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	295, 373, 412
PkrI	GCNGC	1 cut(s)	368
PscI	ACATGT	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	110, 157
PspPI	GGNCC	3 cut(s)	108, 155, 506
PsuI	RGATCY	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	1 cut(s)	367
Sau3AI	GATC	3 cut(s)	21, 142, 471
Sau96I	GGNCC	3 cut(s)	108, 155, 506
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	3 cut(s)	41, 255, 514
SfuI	TTCGAA	1 cut(s)	391
SinI	GGWCC	3 cut(s)	108, 155, 506
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	3 cut(s)	281, 337, 382
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	3 cut(s)	159, 367, 501
StuI	AGGCCT	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	391
TasI	AATT	3 cut(s)	281, 337, 382
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	3 cut(s)	295, 373, 412
TscAI	CASTG	1 cut(s)	305
TspDTI	ATGAA	6 cut(s)	16, 67, 121, 140, 375, 480
TspRI	CASTG	1 cut(s)	305
VneI	GTGCAC	1 cut(s)	301
VpaK11BI	GGWCC	3 cut(s)	108, 155, 506
XapI	RAATTY	1 cut(s)	382
XceI	RCATGY	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.