Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Forward (+)

12459094 .. 12462917

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G148300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCCGATTCTTCGTCACCACAGTCTTTCTTCAAAAAGCATTGGGACGGTTACAAGGATTTCTGGTGCGAGAGGTTCTCCTTCCTCAGCAACTACTCCAAGTTCGTCAAGCGCGATAAGCCTCTTCCACCTTGGTCTGAGTCTGATGTCGAAGCTTTCATTGCTTTTGACCCTGTTCATGGCCCCGCTCTGAAGACTGCTAGGGAAGCAGTGAACTTTGGTCTTACAGGAAGTGTTATTGGAGCAGTATCAACTGCTGGCGTTTCGTGGAAATATTCAAGGAGTTTGCATGGTGCTGGACTATCCTTTCTAGCTGGAGGTGTTTTTGGTTGGACATTTGGACACGAAATTGCAAACCACTGGCTGCAACTTTACAGGTTGGACACATTGGCTGCACAAACTAAGTTCCTGGAGTGGTGGGAAGACAAGAATGAGAGACGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

149

Amino Acids

16.84

Weight (kDa)

7.89

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	188
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	34, 279
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	2 cut(s)	155, 314
AluI	AGCT	2 cut(s)	155, 314
Alw26I	GTCTC	1 cut(s)	430
AoxI	GGCC	2 cut(s)	3, 181
ApeKI	GCWGC	2 cut(s)	364, 392
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	200, 429
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	351, 379
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	2 cut(s)	201, 311
BisI	GCNGC	2 cut(s)	365, 393
BlsI	GCNGC	2 cut(s)	366, 394
Bme1390I	CCNGG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	410
BpiI	GAAGAC	2 cut(s)	200, 429
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	2 cut(s)	336, 431
Bpu10I	CCTNAGC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	100, 129
BseNI	ACTGG	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	351, 379
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	5, 183
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	430
BsmBI	CGTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	5, 183
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	5, 183
BspCNI	CTCAG	2 cut(s)	99, 130
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	24, 50, 441
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	3 cut(s)	86, 138, 402
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 161, 206
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	351, 379
BstV2I	GAAGAC	2 cut(s)	200, 429
BsuRI	GGCC	2 cut(s)	5, 183
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	216, 358
Cac8I	GCNNGC	1 cut(s)	259
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	2 cut(s)	179, 290
CviJI	RGCY	7 cut(s)	5, 121, 155, 183, 314, 364, 392
CviKI_1	RGCY	7 cut(s)	5, 121, 155, 183, 314, 364, 392
DdeI	CTNAG	3 cut(s)	86, 138, 402
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	430
FaeI	CATG	2 cut(s)	182, 293
FaiI	YATR	2 cut(s)	180, 291
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	2 cut(s)	178, 289
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	365, 393
Fsp4HI	GCNGC	2 cut(s)	365, 393
FspBI	CTAG	2 cut(s)	201, 311
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	365, 393
GsuI	CTGGAG	2 cut(s)	336, 431
HaeIII	GGCC	2 cut(s)	5, 183
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	182, 293
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	2 cut(s)	8, 140
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	139, 145, 192
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	3 cut(s)	24, 50, 441
HpyCH4V	TGCA	4 cut(s)	289, 353, 367, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 161, 206
HpyF3I	CTNAG	3 cut(s)	86, 138, 402
Hsp92II	CATG	2 cut(s)	182, 293
HspAI	GCGC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	2 cut(s)	351, 379
MaeI	CTAG	2 cut(s)	201, 311
MaeIII	GTNAC	2 cut(s)	15, 50
MbiI	CCGCTC	1 cut(s)	188
MboII	GAAGA	5 cut(s)	3, 22, 116, 205, 434
MluCI	AATT	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	311, 360
MnlI	CCTC	4 cut(s)	66, 95, 132, 311
MseI	TTAA	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	118, 161, 206
NlaIII	CATG	2 cut(s)	182, 293
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	2 cut(s)	366, 394
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	445
SatI	GCNGC	2 cut(s)	365, 393
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	410
SetI	ASST	6 cut(s)	77, 133, 157, 316, 322, 380
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	275
SspMI	CTAG	2 cut(s)	201, 311
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	3 cut(s)	24, 50, 441
TaqI	TCGA	1 cut(s)	150
TasI	AATT	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	445
Tru9I	TTAA	1 cut(s)	445
TscAI	CASTG	2 cut(s)	216, 365
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	364, 392
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	148, 167
TspRI	CASTG	2 cut(s)	216, 365
XspI	CTAG	2 cut(s)	201, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.