Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Forward (+)

53921593 .. 53925140

Gene Structure 3548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20648

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGTGATTCTTCATCATCATCATCATCATCAGTCTCACCTCAGTTTGTTACAAAGCATTGGGAGGGCTTCAAGGAGTTCTGGGGGGAGAGGTTCTCCTTCCTCGACCACTATTCCAAGTTCATCAAGTGTGATAAGCCTCTTCCTTCTTGGTCTGACGCTGATGTTGAAGCATTCATTGCTACTGATCCAGTTCACGGCCCCGCTCTGAAGACTGCTAGGGAAGCAGCAAAATTTGCTCTTACAGGAAGTGTTATTGGAGCAGTATCAACTGCTGGAGTTGCATGGAAATATTCAAGGAGTTTGCATGGTTCTGGACTGGCGTCTTTAGCTGGAGGTGTCTTTGGTTGGACATTTGGACAGGAAATTGCAAACCACTCACTTCAATTGTACAGGTTCGACACCTTGGCTGCACAAACCAAGTTCCTGGAATGGTGGGAAGACAAGAGTGAGCGACAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

154

Amino Acids

16.98

Weight (kDa)

6.19

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	206
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	73, 170, 297, 386
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	227, 410
ApoI	RAATTY	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	17, 30
BbsI	GAAGAC	2 cut(s)	218, 447
BbvI	GCAGC	2 cut(s)	239, 397
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	228, 411
BlsI	GCNGC	2 cut(s)	229, 412
Bme1390I	CCNGG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	428
BoxI	GACNNNNGTC	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	218, 447
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	2 cut(s)	297, 354
BsaHI	GRCGYC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	191, 324
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	191, 324
BseXI	GCAGC	2 cut(s)	239, 397
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	191, 324
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	459
Bst6I	CTCTTC	1 cut(s)	147
BstACI	GRCGYC	1 cut(s)	323
BstAPI	GCANNNNNTGC	2 cut(s)	179, 236
BstAUI	TGTACA	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 224, 236, 281, 329
BstNI	CCWGG	1 cut(s)	428
BstPAI	GACNNNNGTC	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	239, 397
BstV2I	GAAGAC	2 cut(s)	218, 447
BstXI	CCANNNNNNTGG	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	2 cut(s)	167, 312
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	2 cut(s)	285, 308
CviJI	RGCY	5 cut(s)	69, 139, 201, 332, 410
CviKI_1	RGCY	5 cut(s)	69, 139, 201, 332, 410
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	2 cut(s)	288, 311
FaiI	YATR	2 cut(s)	286, 309
FatI	CATG	2 cut(s)	284, 307
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	228, 411
Fsp4HI	GCNGC	2 cut(s)	228, 411
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	2 cut(s)	228, 411
GsuI	CTGGAG	2 cut(s)	297, 354
HaeIII	GGCC	1 cut(s)	201
HgaI	GACGC	2 cut(s)	167, 312
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	288, 311
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	17, 30
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	157, 210
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	2 cut(s)	109, 156
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4V	TGCA	4 cut(s)	284, 307, 371, 413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 224, 236, 281, 329
HpyF3I	CTNAG	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	2 cut(s)	288, 311
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	260
Lsp1109I	GCAGC	2 cut(s)	239, 397
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	189
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	1 cut(s)	187
MboII	GAAGA	4 cut(s)	3, 134, 223, 452
MfeI	CAATTG	1 cut(s)	386
MluCI	AATT	3 cut(s)	233, 366, 386
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	6 cut(s)	51, 58, 84, 113, 150, 329
MseI	TTAA	1 cut(s)	463
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	5 cut(s)	179, 224, 236, 281, 329
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	288, 311
NlaIV	GGNNCC	1 cut(s)	202
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	2 cut(s)	229, 412
PshAI	GACNNNNGTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	2 cut(s)	228, 411
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	428
SetI	ASST	6 cut(s)	43, 95, 334, 340, 398, 407
Sse9I	AATT	3 cut(s)	233, 366, 386
SsiI	CCGC	1 cut(s)	204
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	105, 399
TasI	AATT	3 cut(s)	233, 366, 386
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TseI	GCWGC	2 cut(s)	227, 410
TspDTI	ATGAA	2 cut(s)	112, 166
XapI	RAATTY	1 cut(s)	233
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.