Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Forward (+)

57249704 .. 57253378

Gene Structure 3675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG407800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGTGATTCTTCATCATCATCATCATCAGTCTCACCTCAGTTTGTTACAAAGCATTGGGAGGGCTTCAAGGAGTTCTGGGGGGAGAGGTTCTCCTTCCTCGACCACTATTCCAAGTTCATCAAGCGTGATAAGCCTCTTCCTTCTTGGTCTGACGCCGATGTGGAAGCATTCATTGCTACTGATCCAGTTCACGGCCCCGCTGTAATTTCTTTCTCCTTGTTGTCTTTTGTTTCCTTTACTTTGCCGTTGCTATTTGTGCGTCAACTCTGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

92

Amino Acids

10.41

Weight (kDa)

5.81

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	17, 27
BceAI	ACGGC	2 cut(s)	211, 232
BcoDI	GTCTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	199
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BsaHI	GRCGYC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	184
BssNI	GRCGYC	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 176, 259
BsuRI	GGCC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	2 cut(s)	164, 251
CviJI	RGCY	3 cut(s)	66, 136, 198
CviKI_1	RGCY	3 cut(s)	66, 136, 198
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
FauI	CCCGC	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	198
HgaI	GACGC	2 cut(s)	164, 251
Hin1I	GRCGYC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	17, 27
Hpy166II	GTNNAC	2 cut(s)	193, 266
Hpy188I	TCNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	193, 266
HpyAV	CCTTC	2 cut(s)	106, 153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 176, 259
HpyF3I	CTNAG	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	2 cut(s)	64, 201
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	2 cut(s)	3, 131
MluCI	AATT	1 cut(s)	207
MnlI	CCTC	5 cut(s)	48, 55, 81, 110, 147
MspA1I	CMGCKG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	133, 176, 259
NdeII	GATC	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	197
SetI	ASST	2 cut(s)	40, 92
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	201
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	109, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.