Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Reverse (-)

50585499 .. 50588261

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGTGATTCTTCATCAGTCTCACCTCAGTTTGTTACAAAGCATTGGGAGGGCTTCAAGGAGTTCTGGGGGGAGAGGTTCTCCTTCCTCGACCACTATTCCAAGTTCATCAAGCGTGATAAGCCTCTTCCTTCTTGGTCTGACGCTGATGTTGAAGCATTCATTGCTACTGATCCAGTTCACGGCCCCGCTCTGAAGACTGCTAGGGAAGCAGCGAAATTTGCTGTTACAGGAAGTGTTATTGGAGCAGTATCAACTGCTGGAGTTGCATGGAAATATTCAAGGAGTTTGCATGGTTCTGGACTGGCGTTTTTAGCTGGAGGTGTCTTTGGTTGGACATTTGGACAGGAAATTGCAAACCACTCACTTCAATTGTACAGGTTCGACACCTTGGCTGCACAAACTAAGTTCCTGGAATGGTGGGAAGACAAGAGTGAGCGACAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

149

Amino Acids

16.64

Weight (kDa)

6.51

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	58, 155, 282, 371
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	212, 395
ApoI	RAATTY	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	15, 17
BbsI	GAAGAC	2 cut(s)	203, 432
BbvI	GCAGC	2 cut(s)	224, 382
BceAI	ACGGC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	213, 396
BlsI	GCNGC	2 cut(s)	214, 397
Bme1390I	CCNGG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	413
BpiI	GAAGAC	2 cut(s)	203, 432
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	2 cut(s)	282, 339
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	176, 309
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	2 cut(s)	176, 309
BseXI	GCAGC	2 cut(s)	224, 382
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	186
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	176, 309
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	27, 405
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 164, 209, 221, 266, 314
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	224, 382
BstV2I	GAAGAC	2 cut(s)	203, 432
BsuRI	GGCC	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	2 cut(s)	270, 293
CviJI	RGCY	5 cut(s)	54, 124, 186, 317, 395
CviKI_1	RGCY	5 cut(s)	54, 124, 186, 317, 395
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	27, 405
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	2 cut(s)	273, 296
FaiI	YATR	2 cut(s)	271, 294
FatI	CATG	2 cut(s)	269, 292
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	213, 396
Fsp4HI	GCNGC	2 cut(s)	213, 396
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	2 cut(s)	213, 396
GsuI	CTGGAG	2 cut(s)	282, 339
HaeIII	GGCC	1 cut(s)	186
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	273, 296
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	15, 17
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	142, 195
Hpy188III	TCNNGA	1 cut(s)	300
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	94, 141
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4V	TGCA	4 cut(s)	269, 292, 356, 398
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 164, 209, 221, 266, 314
HpyF3I	CTNAG	2 cut(s)	27, 405
Hsp92II	CATG	2 cut(s)	273, 296
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	2 cut(s)	224, 382
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	34, 226
MalI	GATC	1 cut(s)	174
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	3, 119, 208, 437
MfeI	CAATTG	1 cut(s)	371
MluCI	AATT	3 cut(s)	218, 351, 371
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	6 cut(s)	36, 43, 69, 98, 135, 314
MseI	TTAA	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	413
MunI	CAATTG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	6 cut(s)	121, 164, 209, 221, 266, 314
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	273, 296
NlaIV	GGNNCC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	2 cut(s)	214, 397
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	2 cut(s)	213, 396
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	413
SetI	ASST	6 cut(s)	28, 80, 319, 325, 383, 392
Sse9I	AATT	3 cut(s)	218, 351, 371
SsiI	CCGC	1 cut(s)	189
SspI	AATATT	1 cut(s)	278
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	444
TaqI	TCGA	2 cut(s)	90, 384
TasI	AATT	3 cut(s)	218, 351, 371
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TseI	GCWGC	2 cut(s)	212, 395
TspDTI	ATGAA	2 cut(s)	97, 151
XapI	RAATTY	1 cut(s)	218
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.