Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Forward (+)

10936689 .. 10939403

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g11260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGACTGATTCTTCATCATCCCCTCTTTCTAAGTCCTTCGTCAGTGAGCATTGGGAGGGTTACAAGGATTTCTGGTGCGAACGATTCTCCTTCCTCACCAACTACTCCAAGTTCGTTAAGCGGGACAAGCCCCTTCCTCCCTGGTCCGACTCCGACGTCGAAGTCTTCATTGCTCTCGACCCTGTTCATGGCCCCGCTCTGAAGACTGCTAGGGAAGCAGTGAAATTTGGTCTTGCAGGAAGTGTTATTGGAGCAGTATCAACTGCTGGCTTTGCGTGGAGATATTCAAGGAGTTTACATGGTGCTGGACTGTCCCTTCTTGCTGGAGGTGTTTTTGGTTGGACATATGGACAAGAAGTTGCGAACCACTGGCTGCAACTTTACAGGTTGGACACCTTGGCTGCACAAACCAAGTTCCTCGAGTGGTGGCAGGACAAGAACGAGAGATGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

152

Amino Acids

17.11

Weight (kDa)

6.9

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	155, 161
AatII	GACGTC	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	2 cut(s)	121, 195
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	288
AjnI	CCWGG	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	373, 401
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	144, 191
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	144
BbsI	GAAGAC	2 cut(s)	157, 209
BbvI	GCAGC	2 cut(s)	360, 388
BccI	CCATC	1 cut(s)	441
BciT130I	CCWGG	1 cut(s)	142
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	2 cut(s)	374, 402
BlsI	GCNGC	2 cut(s)	375, 403
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	144, 191
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	142
BpiI	GAAGAC	2 cut(s)	157, 209
BpmI	CTGGAG	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	140, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	374
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	140, 396
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	360, 388
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	419
BslFI	GGGAC	2 cut(s)	137, 298
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	137, 298
BsnI	GGCC	1 cut(s)	192
BsoBI	CYCGRG	1 cut(s)	419
BspACI	CCGC	2 cut(s)	121, 195
BspANI	GGCC	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	140, 396
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 215, 272
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	360, 388
BstV2I	GAAGAC	2 cut(s)	157, 209
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	49, 225, 367
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	144, 191
CviAII	CATG	2 cut(s)	188, 299
CviJI	RGCY	5 cut(s)	130, 192, 270, 373, 401
CviKI_1	RGCY	5 cut(s)	130, 192, 270, 373, 401
DdeI	CTNAG	1 cut(s)	30
DrdI	GACNNNNNNGTC	2 cut(s)	155, 161
DseDI	GACNNNNNNGTC	2 cut(s)	155, 161
Eco130I	CCWWGG	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	191, 302
FaiI	YATR	4 cut(s)	189, 300, 346, 348
FaqI	GGGAC	2 cut(s)	137, 298
FatI	CATG	2 cut(s)	187, 298
FauI	CCCGC	2 cut(s)	114, 202
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	374, 402
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	2 cut(s)	374, 402
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	2 cut(s)	374, 402
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	191, 302
HinfI	GANTC	3 cut(s)	8, 84, 149
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	3 cut(s)	148, 154, 201
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	2 cut(s)	158, 161
HpyAV	CCTTC	4 cut(s)	46, 100, 143, 326
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	236, 376, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 215, 272
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	191, 302
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	2 cut(s)	360, 388
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	197
MboII	GAAGA	3 cut(s)	3, 157, 214
MluCI	AATT	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	4 cut(s)	171, 177, 320, 369
MnlI	CCTC	6 cut(s)	33, 49, 104, 147, 320, 428
MseI	TTAA	2 cut(s)	117, 454
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	3 cut(s)	127, 215, 272
NdeI	CATATG	1 cut(s)	346
NlaIII	CATG	2 cut(s)	191, 302
NlaIV	GGNNCC	1 cut(s)	193
PaeR7I	CTCGAG	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	8, 84
PkrI	GCNGC	2 cut(s)	375, 403
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	144, 191
PspXI	VCTCGAGB	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	117, 454
SatI	GCNGC	2 cut(s)	374, 402
Sau96I	GGNCC	2 cut(s)	144, 191
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	142
SetI	ASST	4 cut(s)	159, 331, 389, 398
Sfr274I	CTCGAG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	144
SlaI	CTCGAG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	1 cut(s)	224
SsiI	CCGC	2 cut(s)	121, 195
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	312
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	159, 177, 420
TasI	AATT	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	8, 84
Tru1I	TTAA	2 cut(s)	117, 454
Tru9I	TTAA	2 cut(s)	117, 454
TscAI	CASTG	3 cut(s)	49, 225, 374
TseI	GCWGC	2 cut(s)	373, 401
TspDTI	ATGAA	2 cut(s)	157, 176
TspRI	CASTG	3 cut(s)	49, 225, 374
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	419
XspI	CTAG	1 cut(s)	210
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.