Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Reverse (-)

16367044 .. 16367973

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001494

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGTGATTCTTCATCATCATCATCATCAGCCTCACCTCAGTTTGTTACAAAGCATTGGGAGGGCTTCAAGGAGTTCTGGGGTGAGAGGTTCTCCTTCCTCGACCACTATTCCAGGTTCATCAAGCGTGATAAGCCTCTTCCTTCTTGGTCTGACGCTGATGTTGAAGCATTCATTGCTACTGATCCAGTTCACGGCCCCGCTCTGAAGACTGCTAGGGAAGCAGCGAAATTTGCTGTTACAGGAAGTGTTATTGGAGCAGTATCAACTGCTGGAGTTGCATGGAAATATTCAAGGAGTTTGCATGCTTCACATGGATATGAGATGATCACTGTGATAGTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

116

Amino Acids

12.65

Weight (kDa)

7.02

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	203
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	70, 167, 294
AjnI	CCWGG	1 cut(s)	113
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	17, 27, 95
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	115
BclI	TGATCA	1 cut(s)	327
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	215
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpmI	CTGGAG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	184, 327
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	188
BssMI	GATC	2 cut(s)	184, 327
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	187, 330
BstMBI	GATC	2 cut(s)	184, 327
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 176, 221, 233, 278
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	330, 343
Cac8I	GCNNGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	1 cut(s)	164
CviAII	CATG	3 cut(s)	282, 305, 314
CviJI	RGCY	4 cut(s)	32, 66, 136, 198
CviKI_1	RGCY	4 cut(s)	32, 66, 136, 198
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	2 cut(s)	186, 329
DpnII	GATC	2 cut(s)	184, 327
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	113
FaeI	CATG	3 cut(s)	285, 308, 317
FaiI	YATR	4 cut(s)	283, 306, 315, 321
FatI	CATG	3 cut(s)	281, 304, 313
FauI	CCCGC	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	198
HgaI	GACGC	1 cut(s)	164
Hin1II	CATG	3 cut(s)	285, 308, 317
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	3 cut(s)	17, 27, 95
Hpy166II	GTNNAC	2 cut(s)	193, 343
Hpy188I	TCNGA	2 cut(s)	154, 207
Hpy8I	GTNNAC	2 cut(s)	193, 343
HpyAV	CCTTC	2 cut(s)	106, 153
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	2 cut(s)	281, 304
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 176, 221, 233, 278
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	285, 308, 317
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	184, 327
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	6 cut(s)	64, 100, 127, 201, 228, 258
Lsp1109I	GCAGC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	46, 238
MalI	GATC	2 cut(s)	186, 329
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	2 cut(s)	184, 327
MboII	GAAGA	3 cut(s)	3, 131, 220
MluCI	AATT	1 cut(s)	230
MnlI	CCTC	6 cut(s)	43, 48, 55, 81, 110, 147
MslI	CAYNNNNRTG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	5 cut(s)	133, 176, 221, 233, 278
NdeII	GATC	2 cut(s)	184, 327
NlaIII	CATG	3 cut(s)	285, 308, 317
NlaIV	GGNNCC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	308
PaeI	GCATGC	1 cut(s)	308
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	318
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	184, 327
Sau96I	GGNCC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	3 cut(s)	40, 92, 119
SmiMI	CAYNNNNRTG	1 cut(s)	318
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	201
SspI	AATATT	1 cut(s)	290
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	109, 163
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	308
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.