Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007103.1

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Reverse (-)

62662 .. 64823

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007103.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgggtgattcttcatcatcatcatcatcagtctcacctcagtttgttacaaagcattgggagggcttcaaggagttctggggggagaggttctccttcctcgaccactattccaagttcatcaagcgtgataagcctcttccttcttggtctgacgctgatgttgaagcattcattgctactgatccagttcatggccccgctctgaagactgctagggaagcagcgaaatttgctgttacaggaagtgttattggagcagtatcaactgctggagttgcatggaaatattcaaggagtttgcatggttctggactggcgtttttagctggaggtgtctttggttggacatttggacaggaaattgcaaaccactcacttcaattgtacaggttcgacaccttggctgcacaaactaagttcttggaatggtgggaagacaagagtgagcgacagtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

153

Amino Acids

16.99

Weight (kDa)

6.51

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	203
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	70, 167, 294, 383
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	224, 407
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	17, 27
BbsI	GAAGAC	2 cut(s)	215, 444
BbvI	GCAGC	2 cut(s)	236, 394
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	2 cut(s)	225, 408
BlsI	GCNGC	2 cut(s)	226, 409
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	199
BpiI	GAAGAC	2 cut(s)	215, 444
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpmI	CTGGAG	2 cut(s)	294, 351
BsaJI	CCNNGG	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	188, 321
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	2 cut(s)	188, 321
BseXI	GCAGC	2 cut(s)	236, 394
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	174
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	188, 321
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	39, 417
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	6 cut(s)	133, 176, 221, 233, 278, 326
BstV1I	GCAGC	2 cut(s)	236, 394
BstV2I	GAAGAC	2 cut(s)	215, 444
BsuRI	GGCC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	3 cut(s)	194, 282, 305
CviJI	RGCY	5 cut(s)	66, 136, 198, 329, 407
CviKI_1	RGCY	5 cut(s)	66, 136, 198, 329, 407
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	39, 417
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	3 cut(s)	197, 285, 308
FaiI	YATR	3 cut(s)	195, 283, 306
FatI	CATG	3 cut(s)	193, 281, 304
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	225, 408
Fsp4HI	GCNGC	2 cut(s)	225, 408
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	2 cut(s)	225, 408
GsuI	CTGGAG	2 cut(s)	294, 351
HaeIII	GGCC	1 cut(s)	198
HgaI	GACGC	1 cut(s)	164
Hin1II	CATG	3 cut(s)	197, 285, 308
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	17, 27
Hpy188I	TCNGA	2 cut(s)	154, 207
Hpy188III	TCNNGA	1 cut(s)	312
HpyAV	CCTTC	2 cut(s)	106, 153
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4V	TGCA	4 cut(s)	281, 304, 368, 410
HpyF10VI	GCNNNNNNNGC	6 cut(s)	133, 176, 221, 233, 278, 326
HpyF3I	CTNAG	2 cut(s)	39, 417
Hsp92II	CATG	3 cut(s)	197, 285, 308
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	9 cut(s)	64, 201, 228, 258, 297, 302, 315, 344, 376
Lsp1109I	GCAGC	2 cut(s)	236, 394
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	46, 238
MalI	GATC	1 cut(s)	186
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	1 cut(s)	184
MboII	GAAGA	4 cut(s)	3, 131, 220, 449
MfeI	CAATTG	1 cut(s)	383
MluCI	AATT	3 cut(s)	230, 363, 383
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	6 cut(s)	48, 55, 81, 110, 147, 326
MseI	TTAA	1 cut(s)	460
MunI	CAATTG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	170
MwoI	GCNNNNNNNGC	6 cut(s)	133, 176, 221, 233, 278, 326
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	197, 285, 308
NlaIV	GGNNCC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	226, 409
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	2 cut(s)	225, 408
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	197
SetI	ASST	6 cut(s)	40, 92, 331, 337, 395, 404
Sse9I	AATT	3 cut(s)	230, 363, 383
SsiI	CCGC	1 cut(s)	201
SspI	AATATT	1 cut(s)	290
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	456
TaqI	TCGA	2 cut(s)	102, 396
TasI	AATT	3 cut(s)	230, 363, 383
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TseI	GCWGC	2 cut(s)	224, 407
TspDTI	ATGAA	3 cut(s)	109, 163, 182
Van91I	CCANNNNNTGG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	230
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.