Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Forward (+)

3093644 .. 3094954

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTTCACCAACTCTTACTCTCCTCCTCCTCCTCACCACCGTCTCCTTCTTCATCTCCTCCTCCGCAGATCCTGACATGCTTCAAGATCTCTGCGTCGCTGATCTTCCCTCTGGAATCAAAATCAATGGCTTCCCTTGCAAAGACGCAGCTACAGTCACATCAGCCGATTTCTTCTCACAAGGATTAGCTAAACCAGGTCTTACCAACAACACATTCGGTGCCTTAGTCACAGGAGCTAACGTTATGACAATCCCAGGACTCAACACACTTGGTGTCTCCCTCTCTCGTATCGACTACGCACCAGGAGGCTTAAACCCACCTCACACCCACCCACGTGCCACTGAGGTCGTTTTCGTCCTCGAAGGAACACTTGACGTTGGGTTTCTCACTACTGCCAATAAGCTAATCTCTCAATCTCTCAAGAAAGGAGATGTCTTTGCTTTCCCCAAAGGACTTGTCCATTTCCAGAAGAACAATGGTGATGTCCCTGCTTCTGTTATTGCAGCTTTCAATAGTCAGCTTCCTGGAACTCAATCTCTTGGTGCTACTTTGTTTGGTTCTACTCCTCCTGTTCCTGACAACATCTTGGCTCAAGCCTTTCAGACTTCTCCAGGAACTGTTAAACACATCAAATCCAAGTTCCAACCCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

219

Amino Acids

22.87

Weight (kDa)

8.57

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	62 - 208	1.9e-50	Cupin
Cupin_2	PF07883	98 - 170	1.6e-12	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	1 cut(s)	66
AclI	AACGTT	1 cut(s)	243
AclWI	GGATC	1 cut(s)	65
AcvI	CACGTG	1 cut(s)	338
AdeI	CACNNNGTG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	86, 514
AjnI	CCWGG	5 cut(s)	196, 256, 304, 526, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	6 cut(s)	152, 191, 239, 406, 509, 523
AluI	AGCT	6 cut(s)	152, 191, 239, 406, 509, 523
Alw26I	GTCTC	2 cut(s)	49, 283
AlwI	GGATC	1 cut(s)	65
AlwNI	CAGNNNCTG	2 cut(s)	74, 620
ApeKI	GCWGC	2 cut(s)	149, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	444, 476
AsuHPI	GGTGA	2 cut(s)	28, 494
BanI	GGYRCC	1 cut(s)	221
BbrPI	CACGTG	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	161, 518
BciT130I	CCWGG	5 cut(s)	198, 258, 306, 528, 615
BcoDI	GTCTC	2 cut(s)	49, 283
BfmI	CTRYAG	1 cut(s)	153
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	2 cut(s)	150, 507
BlsI	GCNGC	2 cut(s)	151, 508
Bme1390I	CCNGG	5 cut(s)	198, 258, 306, 528, 615
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	5 cut(s)	198, 258, 306, 528, 615
BpmI	CTGGAG	1 cut(s)	597
BpuEI	CTTGAG	2 cut(s)	407, 579
BsaAI	YACGTR	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
BseBI	CCWGG	5 cut(s)	198, 258, 306, 528, 615
BseDI	CCNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	336
BseRI	GAGGAG	7 cut(s)	14, 17, 20, 23, 49, 52, 558
BseXI	GCAGC	2 cut(s)	161, 518
BshNI	GGYRCC	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	473
BsmAI	GTCTC	2 cut(s)	49, 283
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	70, 88, 103
BspACI	CCGC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	70, 88, 103
Bst2UI	CCWGG	5 cut(s)	198, 258, 306, 528, 615
Bst4CI	ACNGT	3 cut(s)	43, 157, 622
BstBAI	YACGTR	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	226, 345
BstKTI	GATC	3 cut(s)	73, 91, 106
BstMAI	GTCTC	2 cut(s)	49, 283
BstMBI	GATC	3 cut(s)	70, 88, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	5 cut(s)	198, 258, 306, 528, 615
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	5 cut(s)	196, 256, 304, 526, 613
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	161, 518
BstX2I	RGATCY	2 cut(s)	70, 88
BstYI	RGATCY	2 cut(s)	70, 88
BtsIMutI	CAGTG	1 cut(s)	342
CaiI	CAGNNNCTG	2 cut(s)	74, 620
CseI	GACGC	2 cut(s)	85, 155
CsiI	ACCWGGT	1 cut(s)	196
CviAII	CATG	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	226, 345
DpnI	GATC	3 cut(s)	72, 90, 105
DpnII	GATC	3 cut(s)	70, 88, 103
DraIII	CACNNNGTG	1 cut(s)	275
Eco72I	CACGTG	1 cut(s)	338
EcoRII	CCWGG	5 cut(s)	196, 256, 304, 526, 613
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	82
FaiI	YATR	2 cut(s)	80, 248
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	150, 507
Fsp4HI	GCNGC	2 cut(s)	150, 507
GluI	GCNGC	2 cut(s)	150, 507
GsuI	CTGGAG	1 cut(s)	597
HgaI	GACGC	2 cut(s)	85, 155
Hin1II	CATG	1 cut(s)	82
HinfI	GANTC	2 cut(s)	117, 261
HphI	GGTGA	2 cut(s)	28, 494
Hpy188I	TCNGA	1 cut(s)	606
Hpy188III	TCNNGA	6 cut(s)	74, 86, 114, 424, 469, 578
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	58, 359
HpyCH4III	ACNGT	3 cut(s)	43, 157, 622
HpyCH4IV	ACGT	3 cut(s)	243, 337, 378
HpyCH4V	TGCA	2 cut(s)	141, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	2 cut(s)	226, 345
HpySE526I	ACGT	3 cut(s)	243, 337, 378
Hsp92II	CATG	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	70, 88, 103
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	2 cut(s)	161, 518
MabI	ACCWGGT	1 cut(s)	196
MaeII	ACGT	3 cut(s)	243, 337, 378
MaeIII	GTNAC	2 cut(s)	157, 229
MalI	GATC	3 cut(s)	72, 90, 105
MboI	GATC	3 cut(s)	70, 88, 103
MboII	GAAGA	4 cut(s)	43, 98, 166, 484
MflI	RGATCY	2 cut(s)	70, 88
MlyI	GAGTC	1 cut(s)	255
MseI	TTAA	2 cut(s)	314, 624
MslI	CAYNNNNRTG	1 cut(s)	336
MspR9I	CCNGG	5 cut(s)	198, 258, 306, 528, 615
MvaI	CCWGG	5 cut(s)	198, 258, 306, 528, 615
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	3 cut(s)	70, 88, 103
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	157, 229
NspI	RCATGY	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	117
PfoI	TCCNGGA	2 cut(s)	526, 613
PkrI	GCNGC	2 cut(s)	151, 508
PleI	GAGTC	1 cut(s)	255
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	338
Psp1406I	AACGTT	1 cut(s)	243
Psp6I	CCWGG	5 cut(s)	196, 256, 304, 526, 613
PspCI	CACGTG	1 cut(s)	338
PspGI	CCWGG	5 cut(s)	196, 256, 304, 526, 613
PspN4I	GGNNCC	1 cut(s)	223
PstNI	CAGNNNCTG	2 cut(s)	74, 620
PsuI	RGATCY	2 cut(s)	70, 88
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	314, 624
SatI	GCNGC	2 cut(s)	150, 507
Sau3AI	GATC	3 cut(s)	70, 88, 103
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	5 cut(s)	198, 258, 306, 528, 615
SexAI	ACCWGGT	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	2 cut(s)	422, 594
SmoI	CTYRAG	2 cut(s)	422, 594
SsiI	CCGC	1 cut(s)	66
StyD4I	CCNGG	5 cut(s)	196, 256, 304, 526, 613
TaaI	ACNGT	3 cut(s)	43, 157, 622
TaiI	ACGT	3 cut(s)	246, 340, 381
TaqI	TCGA	2 cut(s)	294, 363
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	314, 624
Tru9I	TTAA	2 cut(s)	314, 624
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	157, 229
TseI	GCWGC	2 cut(s)	149, 506
Tsp45I	GTSAC	2 cut(s)	157, 229
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	349
XceI	RCATGY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.