Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Forward (+)

18997375 .. 19002375

Gene Structure 5001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGGCTGTCTTTGCTCTCTTTCTTGTGGCTTTTGCCACCGTCTTAGGCAGCTCTGTGGCTGATCCCGACATGCTTGAGGACATTTGCGTCGCCGACCTCACCGCCACGGTGAAAGTCAATGGATTCGTCTGCAAGGACGCAGCAAATGCAACAGCAGAGGACTTTTTCTTCACCGGACTAGCCAAACCAGGCCTCACCAACAACACGTTCGGCTCCATGGCGACTTTAGCCAATGTCCCCGGCCTCAACACCCTCGGCGTTTCGCTTGCCAGAATCGACTTTGCCCCCGGCGGAATTAACCCACCCCACACTCACCCCAGAGCCACAGAAATTGTTTACGTTCTTGAAGGAGAATTGGACGTTGGGTTTATTACCACAGCAAACAAGCTCATCAGAAAAACTATTAAGCAAGGTGAAGTCTTTGTGTTCCCCAAAGGGTTGGTTCATTTCCAAAACAACAATGAGAAGAGCCCGGCTTCCATGATTGCCGCCTTCAACTCTCAGCTGCAGGGCAGATTGGACATTGCCCTCACATTGTTCGCTGCCACGCCGGAGGTGCTGGATAATGTGCTGACCAAGACGTTCCAGGTGGGAACCAAGCAGGTTGACAAAATCAAGTCTAATCTAGCACCCAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

215

Amino Acids

22.7

Weight (kDa)

5.9

Isoelectric Point (pI)

17.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	61 - 203	2.6e-45	Cupin
Cupin_2	PF07883	93 - 165	1e-12	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	595
AciI	CCGC	4 cut(s)	5, 105, 294, 492
AclWI	GGATC	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	350, 499
AjnI	CCWGG	2 cut(s)	190, 588
AjuI	GAANNNNNNNTTGG	4 cut(s)	194, 226, 348, 380
AluBI	AGCT	3 cut(s)	54, 391, 508
AluI	AGCT	3 cut(s)	54, 391, 508
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	3 cut(s)	193, 244, 639
ApeKI	GCWGC	4 cut(s)	51, 143, 508, 545
AsuC2I	CCSGG	3 cut(s)	243, 291, 476
AsuHPI	GGTGA	6 cut(s)	94, 124, 166, 190, 308, 428
BanII	GRGCYC	1 cut(s)	476
BbvI	GCAGC	4 cut(s)	63, 155, 495, 532
BciT130I	CCWGG	2 cut(s)	192, 590
BcnI	CCSGG	3 cut(s)	243, 291, 476
BfaI	CTAG	3 cut(s)	182, 629, 643
BfmI	CTRYAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	595
BisI	GCNGC	6 cut(s)	6, 52, 144, 492, 509, 546
BlsI	GCNGC	6 cut(s)	7, 53, 145, 493, 510, 547
Bme1390I	CCNGG	5 cut(s)	192, 243, 291, 476, 590
BmiI	GGNNCC	2 cut(s)	217, 598
BmrFI	CCNGG	5 cut(s)	192, 243, 291, 476, 590
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	3 cut(s)	243, 291, 476
BsaJI	CCNNGG	6 cut(s)	108, 219, 241, 256, 289, 636
BsaWI	WCCGGW	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	192, 590
BseDI	CCNNGG	6 cut(s)	108, 219, 241, 256, 289, 636
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	518
BseXI	GCAGC	4 cut(s)	63, 155, 495, 532
BshFI	GGCC	3 cut(s)	195, 246, 641
BsiSI	CCGG	5 cut(s)	177, 243, 291, 476, 554
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	3 cut(s)	195, 246, 641
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	4 cut(s)	5, 105, 294, 492
BspANI	GGCC	3 cut(s)	195, 246, 641
BspCNI	CTCAG	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	217, 598
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	525
BssECI	CCNNGG	6 cut(s)	108, 219, 241, 256, 289, 636
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	219, 636
Bst2UI	CCWGG	2 cut(s)	192, 590
Bst4CI	ACNGT	2 cut(s)	43, 112
Bst6I	CTCTTC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	46, 504
BstDSI	CCRYGG	2 cut(s)	108, 219
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 149, 230, 559, 638
BstNI	CCWGG	2 cut(s)	192, 590
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	5 cut(s)	190, 241, 289, 474, 588
BstSFI	CTRYAG	1 cut(s)	509
BstV1I	GCAGC	4 cut(s)	63, 155, 495, 532
BstXI	CCANNNNNNTGG	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	195, 246, 641
BtgI	CCRYGG	2 cut(s)	108, 219
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	1 cut(s)	270
CseI	GACGC	2 cut(s)	79, 149
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	3 cut(s)	73, 220, 484
DdeI	CTNAG	2 cut(s)	46, 504
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
EciI	GGCGGA	1 cut(s)	309
Eco130I	CCWWGG	2 cut(s)	219, 636
Eco147I	AGGCCT	2 cut(s)	195, 641
Eco24I	GRGCYC	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	190, 588
EcoT14I	CCWWGG	2 cut(s)	219, 636
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	2 cut(s)	219, 636
FaeI	CATG	3 cut(s)	76, 223, 487
FaiI	YATR	3 cut(s)	74, 221, 485
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	72, 219, 483
Fnu4HI	GCNGC	6 cut(s)	6, 52, 144, 492, 509, 546
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	6 cut(s)	6, 52, 144, 492, 509, 546
FspBI	CTAG	3 cut(s)	182, 629, 643
GluI	GCNGC	6 cut(s)	6, 52, 144, 492, 509, 546
HaeIII	GGCC	3 cut(s)	195, 246, 641
HapII	CCGG	5 cut(s)	177, 243, 291, 476, 554
HgaI	GACGC	2 cut(s)	79, 149
Hin1II	CATG	3 cut(s)	76, 223, 487
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	2 cut(s)	126, 276
HpaII	CCGG	5 cut(s)	177, 243, 291, 476, 554
HphI	GGTGA	6 cut(s)	94, 124, 166, 190, 308, 428
Hpy166II	GTNNAC	2 cut(s)	340, 610
Hpy188I	TCNGA	1 cut(s)	398
Hpy188III	TCNNGA	2 cut(s)	68, 347
Hpy8I	GTNNAC	2 cut(s)	340, 610
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	344, 505
HpyCH4III	ACNGT	2 cut(s)	43, 112
HpyCH4IV	ACGT	4 cut(s)	209, 342, 363, 584
HpyCH4V	TGCA	3 cut(s)	135, 152, 511
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 149, 230, 559, 638
HpyF3I	CTNAG	2 cut(s)	46, 504
HpySE526I	ACGT	4 cut(s)	209, 342, 363, 584
Hsp92II	CATG	3 cut(s)	76, 223, 487
Kzo9I	GATC	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	4 cut(s)	63, 155, 495, 532
MaeI	CTAG	3 cut(s)	182, 629, 643
MaeII	ACGT	4 cut(s)	209, 342, 363, 584
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	163, 481
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	3 cut(s)	297, 333, 356
MnlI	CCTC	8 cut(s)	73, 110, 154, 206, 257, 266, 542, 550
MseI	TTAA	2 cut(s)	300, 408
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	5 cut(s)	177, 243, 291, 476, 554
MspR9I	CCNGG	5 cut(s)	192, 243, 291, 476, 590
MvaI	CCWGG	2 cut(s)	192, 590
MwoI	GCNNNNNNNGC	5 cut(s)	14, 149, 230, 559, 638
NciI	CCSGG	3 cut(s)	243, 291, 476
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	76, 223, 487
NlaIV	GGNNCC	2 cut(s)	217, 598
NmeAIII	GCCGAG	1 cut(s)	237
NspI	RCATGY	1 cut(s)	76
PceI	AGGCCT	2 cut(s)	195, 641
PciSI	GCTCTTC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	126, 276
PkrI	GCNGC	6 cut(s)	7, 53, 145, 493, 510, 547
Psp6I	CCWGG	2 cut(s)	190, 588
PspGI	CCWGG	2 cut(s)	190, 588
PspN4I	GGNNCC	2 cut(s)	217, 598
PstI	CTGCAG	1 cut(s)	513
PvuII	CAGCTG	1 cut(s)	508
SapI	GCTCTTC	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	300, 408
SatI	GCNGC	6 cut(s)	6, 52, 144, 492, 509, 546
Sau3AI	GATC	1 cut(s)	64
ScrFI	CCNGG	5 cut(s)	192, 243, 291, 476, 590
SduI	GDGCHC	1 cut(s)	476
SfcI	CTRYAG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	297, 333, 356
SseBI	AGGCCT	2 cut(s)	195, 641
SsiI	CCGC	4 cut(s)	5, 105, 294, 492
SspMI	CTAG	3 cut(s)	182, 629, 643
StuI	AGGCCT	2 cut(s)	195, 641
StyD4I	CCNGG	5 cut(s)	190, 241, 289, 474, 588
StyI	CCWWGG	2 cut(s)	219, 636
TaaI	ACNGT	2 cut(s)	43, 112
TaiI	ACGT	4 cut(s)	212, 345, 366, 587
TaqI	TCGA	1 cut(s)	279
TasI	AATT	3 cut(s)	297, 333, 356
TauI	GCSGC	2 cut(s)	8, 494
TfiI	GAWTC	2 cut(s)	126, 276
Tru1I	TTAA	2 cut(s)	300, 408
Tru9I	TTAA	2 cut(s)	300, 408
TseI	GCWGC	4 cut(s)	51, 143, 508, 545
TspDTI	ATGAA	1 cut(s)	437
XceI	RCATGY	1 cut(s)	76
XspI	CTAG	3 cut(s)	182, 629, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.