Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Reverse (-)

27858523 .. 27860033

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1197400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGGCTGTCTTTGCTCTCTTTCTTGTGGCTCTTGCCACCGTCTTCGGCAGCTCTGCCGCTGATCCTGACATGCTTCAGGACATTTGCGTTGCCGACTACGCCGCCGGCGTGAAAGTGAATGGGTTCGTCTGCAAGGACGCAGCAAATGCAACCGCAGAGGACTTTTTCAGCGCCGGACTAGCCAAACCAGGCCTCACCAACAACACATTCGGCTCCCTGGTGACAGCAGCCAATGTCCAAAAAATCCCCGGCCTCAACACCCTCGGCGTCTCGCTCGCCAGAATCGACTACGCCCCCGGTGGAATTAACCCGCCTCACACCCACCCCAGAGCCACGGAAATTGTTTACGTTCTTGAAGGAGTATTGGACGTCGGATTCATCACCACGGCAAACAAGCTCATCAGCAAAACCATCCAGAAAGGCGAAGTCTTTGTGTTCCCCAAAGGGTTGGTTCACTTCCAGAACAACAACGGGAAGGGTCCGGCTTCCGTGATTGCCGGGTTCAACTCTCAGCTGCAGGGCACGGTGAACATTGCACTCACATTGTTCGCTGCCACGCCGGAGGTGCCGGATCATGTGCTGACTAAGACATTCATGGTGGGAACTAAGATGGTCGACAAAATCAAGTCTAGGCTTGCACCCAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

218

Amino Acids

22.65

Weight (kDa)

8.52

Isoelectric Point (pI)

19.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	60 - 206	3.7e-50	Cupin
Cupin_2	PF07883	96 - 166	1.3e-11	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	618
AciI	CCGC	5 cut(s)	5, 60, 105, 156, 314
AclWI	GGATC	2 cut(s)	59, 582
AcuI	CTGAAG	1 cut(s)	62
AcyI	GRCGYC	2 cut(s)	270, 372
AgsI	TTSAA	2 cut(s)	359, 508
AjnI	CCWGG	2 cut(s)	190, 219
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	3 cut(s)	54, 400, 517
AluI	AGCT	3 cut(s)	54, 400, 517
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	2 cut(s)	59, 582
AoxI	GGCC	3 cut(s)	193, 253, 648
ApeKI	GCWGC	5 cut(s)	51, 143, 230, 517, 554
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	482
AsuC2I	CCSGG	3 cut(s)	252, 300, 502
AsuHPI	GGTGA	4 cut(s)	190, 235, 376, 541
AvaII	GGWCC	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	527
BanI	GGYRCC	1 cut(s)	568
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	5 cut(s)	63, 155, 242, 504, 541
BccI	CCATC	2 cut(s)	422, 607
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	2 cut(s)	192, 221
BcnI	CCSGG	3 cut(s)	252, 300, 502
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	3 cut(s)	182, 633, 652
BfmI	CTRYAG	1 cut(s)	518
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	8 cut(s)	6, 52, 60, 105, 144, 231, 518, 555
BlsI	GCNGC	8 cut(s)	7, 53, 61, 106, 145, 232, 519, 556
Bme1390I	CCNGG	5 cut(s)	192, 221, 252, 300, 502
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	3 cut(s)	217, 483, 570
BmrFI	CCNGG	5 cut(s)	192, 221, 252, 300, 502
BpiI	GAAGAC	1 cut(s)	37
BpuMI	CCSGG	3 cut(s)	252, 300, 502
BsaHI	GRCGYC	2 cut(s)	270, 372
BsaJI	CCNNGG	7 cut(s)	219, 250, 265, 298, 336, 387, 645
Bse118I	RCCGGY	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	2 cut(s)	192, 221
BseDI	CCNNGG	7 cut(s)	219, 250, 265, 298, 336, 387, 645
BseGI	GGATG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	5 cut(s)	63, 155, 242, 504, 541
BshFI	GGCC	3 cut(s)	195, 255, 650
BshNI	GGYRCC	1 cut(s)	568
BsiSI	CCGG	8 cut(s)	108, 177, 252, 300, 485, 501, 563, 572
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	195, 255, 650
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	2 cut(s)	64, 574
BspACI	CCGC	5 cut(s)	5, 60, 105, 156, 314
BspANI	GGCC	3 cut(s)	195, 255, 650
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	3 cut(s)	217, 483, 570
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	2 cut(s)	59, 582
BspT107I	GGYRCC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	7 cut(s)	219, 250, 265, 298, 336, 387, 645
BssMI	GATC	2 cut(s)	64, 574
BssNI	GRCGYC	2 cut(s)	270, 372
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	2 cut(s)	192, 221
Bst4CI	ACNGT	2 cut(s)	43, 529
BstACI	GRCGYC	2 cut(s)	270, 372
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	109, 279, 639
BstDEI	CTNAG	3 cut(s)	513, 588, 609
BstDSI	CCRYGG	2 cut(s)	336, 387
BstF5I	GGATG	1 cut(s)	414
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	67, 577
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	64, 574
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 101, 149, 182, 568, 647
BstNI	CCWGG	2 cut(s)	192, 221
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	5 cut(s)	190, 219, 250, 298, 500
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	527
BstV1I	GCAGC	5 cut(s)	63, 155, 242, 504, 541
BstV2I	GAAGAC	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	195, 255, 650
BtgI	CCRYGG	2 cut(s)	336, 387
BtsCI	GGATG	1 cut(s)	414
Cac8I	GCNNGC	3 cut(s)	109, 279, 639
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	2 cut(s)	149, 259
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	3 cut(s)	73, 578, 598
DdeI	CTNAG	3 cut(s)	513, 588, 609
DpnI	GATC	2 cut(s)	66, 576
DpnII	GATC	2 cut(s)	64, 574
Eco130I	CCWWGG	1 cut(s)	645
Eco147I	AGGCCT	2 cut(s)	195, 650
Eco47I	GGWCC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	62
EcoRII	CCWGG	2 cut(s)	190, 219
EcoT14I	CCWWGG	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	3 cut(s)	76, 581, 601
FaiI	YATR	3 cut(s)	74, 579, 599
FatI	CATG	3 cut(s)	72, 577, 597
FauI	CCCGC	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	8 cut(s)	6, 52, 60, 105, 144, 231, 518, 555
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	8 cut(s)	6, 52, 60, 105, 144, 231, 518, 555
FspBI	CTAG	3 cut(s)	182, 633, 652
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	8 cut(s)	6, 52, 60, 105, 144, 231, 518, 555
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	195, 255, 650
HapII	CCGG	8 cut(s)	108, 177, 252, 300, 485, 501, 563, 572
HgaI	GACGC	2 cut(s)	149, 259
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	270, 372
Hin1II	CATG	3 cut(s)	76, 581, 601
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	2 cut(s)	285, 378
HpaII	CCGG	8 cut(s)	108, 177, 252, 300, 485, 501, 563, 572
HphI	GGTGA	4 cut(s)	190, 235, 376, 541
Hpy166II	GTNNAC	4 cut(s)	349, 457, 532, 619
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	5 cut(s)	68, 80, 356, 418, 463
Hpy8I	GTNNAC	4 cut(s)	349, 457, 532, 619
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	2 cut(s)	353, 472
HpyCH4III	ACNGT	2 cut(s)	43, 529
HpyCH4IV	ACGT	2 cut(s)	351, 372
HpyCH4V	TGCA	5 cut(s)	135, 152, 520, 539, 641
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 101, 149, 182, 568, 647
HpyF3I	CTNAG	3 cut(s)	513, 588, 609
HpySE526I	ACGT	2 cut(s)	351, 372
Hsp92I	GRCGYC	2 cut(s)	270, 372
Hsp92II	CATG	3 cut(s)	76, 581, 601
HspAI	GCGC	1 cut(s)	174
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	64, 574
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	5 cut(s)	63, 155, 242, 504, 541
MaeI	CTAG	3 cut(s)	182, 633, 652
MaeII	ACGT	2 cut(s)	351, 372
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	66, 576
MboI	GATC	2 cut(s)	64, 574
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	2 cut(s)	306, 342
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	6 cut(s)	154, 206, 266, 275, 327, 559
MreI	CGCCGGCG	1 cut(s)	107
MroNI	GCCGGC	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	2 cut(s)	62, 517
MspI	CCGG	8 cut(s)	108, 177, 252, 300, 485, 501, 563, 572
MspR9I	CCNGG	5 cut(s)	192, 221, 252, 300, 502
MvaI	CCWGG	2 cut(s)	192, 221
MwoI	GCNNNNNNNGC	6 cut(s)	14, 101, 149, 182, 568, 647
NaeI	GCCGGC	1 cut(s)	109
NciI	CCSGG	3 cut(s)	252, 300, 502
NdeII	GATC	2 cut(s)	64, 574
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	3 cut(s)	76, 581, 601
NlaIV	GGNNCC	3 cut(s)	217, 483, 570
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	76
PceI	AGGCCT	2 cut(s)	195, 650
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 285
PdiI	GCCGGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	285, 378
PkrI	GCNGC	8 cut(s)	7, 53, 61, 106, 145, 232, 519, 556
Psp6I	CCWGG	2 cut(s)	190, 219
PspGI	CCWGG	2 cut(s)	190, 219
PspN4I	GGNNCC	3 cut(s)	217, 483, 570
PspPI	GGNCC	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	522
PvuII	CAGCTG	1 cut(s)	517
SalI	GTCGAC	1 cut(s)	617
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	8 cut(s)	6, 52, 60, 105, 144, 231, 518, 555
Sau3AI	GATC	2 cut(s)	64, 574
Sau96I	GGNCC	1 cut(s)	482
ScrFI	CCNGG	5 cut(s)	192, 221, 252, 300, 502
SduI	GDGCHC	1 cut(s)	527
SetI	ASST	6 cut(s)	56, 354, 375, 402, 519, 570
SfcI	CTRYAG	1 cut(s)	518
SgrAI	CRCCGGYG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	482
Sse9I	AATT	2 cut(s)	306, 342
SseBI	AGGCCT	2 cut(s)	195, 650
SsiI	CCGC	5 cut(s)	5, 60, 105, 156, 314
SspMI	CTAG	3 cut(s)	182, 633, 652
StuI	AGGCCT	2 cut(s)	195, 650
StyD4I	CCNGG	5 cut(s)	190, 219, 250, 298, 500
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	43, 529
TaiI	ACGT	2 cut(s)	354, 375
TaqI	TCGA	2 cut(s)	288, 618
TasI	AATT	2 cut(s)	306, 342
TauI	GCSGC	3 cut(s)	8, 62, 107
TfiI	GAWTC	2 cut(s)	285, 378
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	5 cut(s)	51, 143, 230, 517, 554
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	370, 586
TspGWI	ACGGA	2 cut(s)	353, 481
VpaK11BI	GGWCC	1 cut(s)	482
XceI	RCATGY	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	3 cut(s)	182, 633, 652
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.