Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Reverse (-)

41800588 .. 41801949

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGGCGGCTATCCTGGCAGTGTTTGTGATGACTTTTGCTATGGTCTTTGGCAACTCTGCTGCTGATCCGGACTTGCTTCAAGATATTTGTGTTGCAGACTTCACTTCCGCGACGAAAGTCAATGGGTTCGCGTGCAAGGACGCAGCGAATGCAACAGCAGAGGACTTCTTCTTTGCGGGACTAGCAAAGCCAGGCCTCACCAACAACACCTTTGGCTCTTTGGTGACTGCAGCCAATGTCCAGAAGATCCCAGGCCTCAACACCCTAGGCGTGTCGTTGGCCCGTATTGACTATGCTCCCGGAGGCATCAACCCACCTCACACTCACCCACGCGCCACTGAAATAGTCTATGTTCTAGAAGGTTCATTGAATGTTGGGTTCATAACCACAGCTAACAAACTCATTTCCAAGACTATTTCTAAAGGTGAAGTCTTTGTGTTCCCAAAGGGGTTGGTTCATTTCCAGAAGAACAATGGCAAGGTCCCCGCTGCCGTGATCGCCGGGTTTAACTCACAGTTGCAAGGCACCGCCAACATTGCCCTCACATTGTTCGCTGCCACACCTCCAGTGGCAGACGATGTGTTGACTAAGACATTCCAAGTTGGTACCAAGCAGATCGAGAAGATCAAGTCAAGGCTTGCACCCAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

218

Amino Acids

22.83

Weight (kDa)

9.1

Isoelectric Point (pI)

23.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	61 - 207	4.3e-51	Cupin
Cupin_2	PF07883	97 - 167	1.5e-11	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	608
AccB1I	GGYRCC	2 cut(s)	527, 608
AccII	CGCG	3 cut(s)	113, 134, 336
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	6 cut(s)	5, 8, 111, 179, 489, 531
AclWI	GGATC	2 cut(s)	62, 244
AfaI	GTAC	1 cut(s)	610
AgsI	TTSAA	2 cut(s)	83, 373
AjnI	CCWGG	3 cut(s)	15, 193, 253
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
AlwI	GGATC	2 cut(s)	62, 244
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	3 cut(s)	196, 256, 282
ApeKI	GCWGC	5 cut(s)	62, 146, 233, 491, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp718I	GGTACC	1 cut(s)	608
AspA2I	CCTAGG	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	283, 484
AsuC2I	CCSGG	2 cut(s)	303, 505
AsuHPI	GGTGA	4 cut(s)	193, 238, 320, 440
AvaII	GGWCC	1 cut(s)	484
AvrII	CCTAGG	1 cut(s)	268
BanI	GGYRCC	2 cut(s)	527, 608
BbvI	GCAGC	5 cut(s)	49, 158, 245, 478, 544
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	3 cut(s)	17, 195, 255
BcnI	CCSGG	2 cut(s)	303, 505
BfaI	CTAG	4 cut(s)	185, 269, 359, 655
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	7 cut(s)	6, 9, 63, 147, 234, 492, 558
BlnI	CCTAGG	1 cut(s)	268
BlsI	GCNGC	7 cut(s)	7, 10, 64, 148, 235, 493, 559
Bme1390I	CCNGG	5 cut(s)	17, 195, 255, 303, 505
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	283, 484
BmiI	GGNNCC	3 cut(s)	486, 529, 610
BmrFI	CCNGG	5 cut(s)	17, 195, 255, 303, 505
BmsI	GCATC	1 cut(s)	318
BoxI	GACNNNNGTC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	552
BpuMI	CCSGG	2 cut(s)	303, 505
BsaJI	CCNNGG	2 cut(s)	253, 268
BsaWI	WCCGGW	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	569
Bse3DI	GCAATG	1 cut(s)	537
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	3 cut(s)	17, 195, 255
BseDI	CCNNGG	2 cut(s)	253, 268
BseMI	GCAATG	1 cut(s)	537
BseNI	ACTGG	1 cut(s)	569
BseXI	GCAGC	5 cut(s)	49, 158, 245, 478, 544
Bsh1236I	CGCG	3 cut(s)	113, 134, 336
BshFI	GGCC	3 cut(s)	198, 258, 284
BshNI	GGYRCC	2 cut(s)	527, 608
BsiSI	CCGG	3 cut(s)	71, 303, 504
BslFI	GGGAC	2 cut(s)	195, 470
BsmFI	GGGAC	2 cut(s)	195, 470
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	198, 258, 284
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	5 cut(s)	67, 249, 498, 618, 627
BspACI	CCGC	6 cut(s)	5, 8, 111, 179, 489, 531
BspANI	GGCC	3 cut(s)	198, 258, 284
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	3 cut(s)	113, 134, 336
BspLI	GGNNCC	3 cut(s)	486, 529, 610
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	2 cut(s)	62, 244
BspT107I	GGYRCC	2 cut(s)	527, 608
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	253, 268
BssMI	GATC	5 cut(s)	67, 249, 498, 618, 627
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	3 cut(s)	17, 195, 255
Bst4CI	ACNGT	1 cut(s)	519
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	136, 642
BstDEI	CTNAG	1 cut(s)	591
BstFNI	CGCG	3 cut(s)	113, 134, 336
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	70, 252, 501, 621, 630
BstMBI	GATC	5 cut(s)	67, 249, 498, 618, 627
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 152, 185, 500, 539
BstNI	CCWGG	3 cut(s)	17, 195, 255
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	5 cut(s)	15, 193, 253, 301, 503
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	3 cut(s)	113, 134, 336
BstV1I	GCAGC	5 cut(s)	49, 158, 245, 478, 544
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	198, 258, 284
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 339, 576
Cac8I	GCNNGC	2 cut(s)	136, 642
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	283, 484
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	609
CviJI	RGCY	9 cut(s)	11, 193, 198, 219, 236, 258, 284, 395, 640
CviKI_1	RGCY	9 cut(s)	11, 193, 198, 219, 236, 258, 284, 395, 640
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	5 cut(s)	69, 251, 500, 620, 629
DpnII	GATC	5 cut(s)	67, 249, 498, 618, 627
Eco130I	CCWWGG	1 cut(s)	268
Eco147I	AGGCCT	2 cut(s)	198, 258
Eco47I	GGWCC	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRII	CCWGG	3 cut(s)	15, 193, 253
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaiI	YATR	4 cut(s)	44, 297, 354, 386
FaqI	GGGAC	2 cut(s)	195, 470
FauI	CCCGC	2 cut(s)	172, 496
Fnu4HI	GCNGC	7 cut(s)	6, 9, 63, 147, 234, 492, 558
Fsp4HI	GCNGC	7 cut(s)	6, 9, 63, 147, 234, 492, 558
FspBI	CTAG	4 cut(s)	185, 269, 359, 655
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	7 cut(s)	6, 9, 63, 147, 234, 492, 558
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	198, 258, 284
HapII	CCGG	3 cut(s)	71, 303, 504
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	338
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HpaII	CCGG	3 cut(s)	71, 303, 504
HphI	GGTGA	4 cut(s)	193, 238, 320, 440
Hpy166II	GTNNAC	1 cut(s)	588
Hpy188III	TCNNGA	6 cut(s)	71, 83, 244, 359, 466, 622
Hpy8I	GTNNAC	1 cut(s)	588
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4V	TGCA	6 cut(s)	98, 138, 155, 233, 523, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 152, 185, 500, 539
HpyF3I	CTNAG	1 cut(s)	591
HspAI	GCGC	1 cut(s)	336
Kpn2I	TCCGGA	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	612
Kzo9I	GATC	5 cut(s)	67, 249, 498, 618, 627
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	5 cut(s)	49, 158, 245, 478, 544
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	4 cut(s)	185, 269, 359, 655
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	5 cut(s)	69, 251, 500, 620, 629
MboI	GATC	5 cut(s)	67, 249, 498, 618, 627
MboII	GAAGA	4 cut(s)	163, 259, 481, 637
MflI	RGATCY	1 cut(s)	249
MnlI	CCTC	7 cut(s)	157, 209, 269, 299, 330, 554, 576
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	3 cut(s)	71, 303, 504
MspR9I	CCNGG	5 cut(s)	17, 195, 255, 303, 505
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	3 cut(s)	17, 195, 255
MvnI	CGCG	3 cut(s)	113, 134, 336
MwoI	GCNNNNNNNGC	5 cut(s)	17, 152, 185, 500, 539
NciI	CCSGG	2 cut(s)	303, 505
NdeII	GATC	5 cut(s)	67, 249, 498, 618, 627
NlaIV	GGNNCC	3 cut(s)	486, 529, 610
NmuCI	GTSAC	1 cut(s)	226
PceI	AGGCCT	2 cut(s)	198, 258
PctI	GAATGC	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	7 cut(s)	7, 10, 64, 148, 235, 493, 559
PpuMI	RGGWCCY	1 cut(s)	484
PshAI	GACNNNNGTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	3 cut(s)	15, 193, 253
PspGI	CCWGG	3 cut(s)	15, 193, 253
PspN4I	GGNNCC	3 cut(s)	486, 529, 610
PspPI	GGNCC	2 cut(s)	283, 484
PspPPI	RGGWCCY	1 cut(s)	484
PstI	CTGCAG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	7 cut(s)	6, 9, 63, 147, 234, 492, 558
Sau3AI	GATC	5 cut(s)	67, 249, 498, 618, 627
Sau96I	GGNCC	2 cut(s)	283, 484
ScrFI	CCNGG	5 cut(s)	17, 195, 255, 303, 505
SetI	ASST	7 cut(s)	215, 322, 367, 397, 430, 486, 568
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	484
SseBI	AGGCCT	2 cut(s)	198, 258
SsiI	CCGC	6 cut(s)	5, 8, 111, 179, 489, 531
SspMI	CTAG	4 cut(s)	185, 269, 359, 655
StuI	AGGCCT	2 cut(s)	198, 258
StyD4I	CCNGG	5 cut(s)	15, 193, 253, 301, 503
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	621
TauI	GCSGC	2 cut(s)	8, 11
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	3 cut(s)	27, 346, 576
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	5 cut(s)	62, 146, 233, 491, 557
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	357, 373, 449
TspRI	CASTG	3 cut(s)	27, 346, 576
VpaK11BI	GGWCC	1 cut(s)	484
XbaI	TCTAGA	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	2 cut(s)	473, 568
XmaJI	CCTAGG	1 cut(s)	268
XspI	CTAG	4 cut(s)	185, 269, 359, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.