Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Forward (+)

5202283 .. 5203871

Gene Structure 1589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGGCTATGTTGGCACTGTTAGTGATGACTTTCGCCATCGTCTTCGGCAACTCAGCTGCTGATCCAGACATGCTTCAAGATATCTGCGTCGCCGACTTCGCTTCTGCGGCGAAAATGAATGGTTTCGCTTGCAAGGACGCGGCAAATGCAACAGCGGAGGACTTCTTCTTTGCCGGAATAGCCAAGCCAGGACTCACCAACAACACCTTCGGCTCTTTGGTGACTTTAGCCAATGTGCAGAAGATCCCAGGTCTTAACACCCTCGGCGTGTCGATGGCTAGAATTGACTATGCTCCCGGAGGCATCAACCCACCTCACACTCACCCACGCGCCACCGAGATAGTCTTCGTGCTTGAAGGTTCGTTGGATGTTGGGTTCGTTACCACAGCAAACAAGCTCATTTCAAAGACCATTGCCAAAGGTGAAGTGTTTGTGTTTCCAAAGGGGTTGATTCACTTCCAGAAGAACAATGGCAAGGTCCCTGCTGCCGTGATCGCCGCGTTCAACTCTCAGCTGCAGGGTACCGCCAACATTGCCCTTACATTGTTCGCCGCCTCGCCGCCGGTGGAGGATGATGTGTTGACCAGTACTTTCCAGGTTGGTACTAAAGAGATTAAGAAGATCAAGGCCAAGTTTGCACCCAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

218

Amino Acids

22.72

Weight (kDa)

8.52

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	60 - 206	8.3e-51	Cupin
Cupin_2	PF07883	96 - 167	3.9e-11	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	524
AccB1I	GGYRCC	1 cut(s)	524
AccII	CGCG	3 cut(s)	143, 333, 503
AciI	CCGC	8 cut(s)	5, 110, 143, 158, 501, 528, 555, 563
AclWI	GGATC	2 cut(s)	59, 241
AfaI	GTAC	3 cut(s)	526, 592, 607
AgsI	TTSAA	4 cut(s)	80, 359, 408, 508
AjnI	CCWGG	3 cut(s)	190, 250, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
AluBI	AGCT	3 cut(s)	59, 400, 517
AluI	AGCT	3 cut(s)	59, 400, 517
AlwI	GGATC	2 cut(s)	59, 241
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	630, 648
ApeKI	GCWGC	3 cut(s)	59, 488, 517
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	1 cut(s)	125
Asp718I	GGTACC	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	4 cut(s)	190, 235, 317, 437
AvaII	GGWCC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	524
BbsI	GAAGAC	2 cut(s)	37, 340
BbvI	GCAGC	3 cut(s)	46, 475, 504
BccI	CCATC	2 cut(s)	47, 271
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	3 cut(s)	192, 252, 599
BcnI	CCSGG	1 cut(s)	300
BfaI	CTAG	2 cut(s)	282, 652
BfmI	CTRYAG	1 cut(s)	518
BisI	GCNGC	9 cut(s)	6, 60, 111, 144, 489, 501, 518, 555, 563
BlsI	GCNGC	9 cut(s)	7, 61, 112, 145, 490, 502, 519, 556, 564
BmcAI	AGTACT	1 cut(s)	592
Bme1390I	CCNGG	4 cut(s)	192, 252, 300, 599
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	2 cut(s)	483, 526
BmrFI	CCNGG	4 cut(s)	192, 252, 300, 599
BmsI	GCATC	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	37, 340
BpuMI	CCSGG	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	250, 265, 645
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	1 cut(s)	588
Bse3DI	GCAATG	2 cut(s)	414, 534
BseBI	CCWGG	3 cut(s)	192, 252, 599
BseDI	CCNNGG	3 cut(s)	250, 265, 645
BseGI	GGATG	2 cut(s)	376, 580
BseMI	GCAATG	2 cut(s)	414, 534
BseMII	CTCAG	2 cut(s)	69, 527
BseNI	ACTGG	1 cut(s)	588
BseXI	GCAGC	3 cut(s)	46, 475, 504
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	3 cut(s)	143, 333, 503
BshFI	GGCC	2 cut(s)	632, 650
BshNI	GGYRCC	1 cut(s)	524
BsiSI	CCGG	3 cut(s)	177, 300, 566
BslFI	GGGAC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	2 cut(s)	632, 650
Bsp143I	GATC	4 cut(s)	64, 246, 495, 624
BspACI	CCGC	8 cut(s)	5, 110, 143, 158, 501, 528, 555, 563
BspANI	GGCC	2 cut(s)	632, 650
BspCNI	CTCAG	2 cut(s)	68, 526
BspFNI	CGCG	3 cut(s)	143, 333, 503
BspLI	GGNNCC	2 cut(s)	483, 526
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	2 cut(s)	59, 241
BspT107I	GGYRCC	1 cut(s)	524
BsrDI	GCAATG	2 cut(s)	414, 534
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	588
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	3 cut(s)	250, 265, 645
BssMI	GATC	4 cut(s)	64, 246, 495, 624
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	3 cut(s)	192, 252, 599
Bst4CI	ACNGT	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	55, 513
BstF5I	GGATG	2 cut(s)	376, 580
BstFNI	CGCG	3 cut(s)	143, 333, 503
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	4 cut(s)	67, 249, 498, 627
BstMBI	GATC	4 cut(s)	64, 246, 495, 624
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 101, 110, 149, 182, 497, 536, 638, 647
BstNI	CCWGG	3 cut(s)	192, 252, 599
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	4 cut(s)	190, 250, 298, 597
BstSFI	CTRYAG	1 cut(s)	518
BstUI	CGCG	3 cut(s)	143, 333, 503
BstV1I	GCAGC	3 cut(s)	46, 475, 504
BstV2I	GAAGAC	2 cut(s)	37, 340
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	632, 650
BtsCI	GGATG	2 cut(s)	376, 580
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	481
CseI	GACGC	2 cut(s)	79, 149
Csp6I	GTAC	3 cut(s)	525, 591, 606
CviAII	CATG	1 cut(s)	73
CviQI	GTAC	3 cut(s)	525, 591, 606
DdeI	CTNAG	2 cut(s)	55, 513
DpnI	GATC	4 cut(s)	66, 248, 497, 626
DpnII	GATC	4 cut(s)	64, 246, 495, 624
Eco130I	CCWWGG	1 cut(s)	645
Eco147I	AGGCCT	1 cut(s)	650
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRII	CCWGG	3 cut(s)	190, 250, 597
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	1 cut(s)	76
FaiI	YATR	3 cut(s)	11, 74, 294
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	9 cut(s)	6, 60, 111, 144, 489, 501, 518, 555, 563
FokI	GGATG	2 cut(s)	383, 587
Fsp4HI	GCNGC	9 cut(s)	6, 60, 111, 144, 489, 501, 518, 555, 563
FspBI	CTAG	2 cut(s)	282, 652
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	9 cut(s)	6, 60, 111, 144, 489, 501, 518, 555, 563
HaeIII	GGCC	2 cut(s)	632, 650
HapII	CCGG	3 cut(s)	177, 300, 566
HgaI	GACGC	2 cut(s)	79, 149
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	2 cut(s)	195, 454
HpaII	CCGG	3 cut(s)	177, 300, 566
HphI	GGTGA	4 cut(s)	190, 235, 317, 437
Hpy166II	GTNNAC	1 cut(s)	585
Hpy188III	TCNNGA	3 cut(s)	68, 80, 463
Hpy8I	GTNNAC	1 cut(s)	585
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	220, 353
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	5 cut(s)	135, 152, 241, 520, 641
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 101, 110, 149, 182, 497, 536, 638, 647
HpyF3I	CTNAG	2 cut(s)	55, 513
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	333
KpnI	GGTACC	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	64, 246, 495, 624
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	3 cut(s)	46, 475, 504
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	2 cut(s)	282, 652
MaeIII	GTNAC	2 cut(s)	223, 382
MalI	GATC	4 cut(s)	66, 248, 497, 626
MboI	GATC	4 cut(s)	64, 246, 495, 624
MboII	GAAGA	6 cut(s)	37, 160, 256, 340, 478, 634
MflI	RGATCY	1 cut(s)	246
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	6 cut(s)	154, 275, 296, 327, 565, 568
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	2 cut(s)	258, 618
MspA1I	CMGCKG	3 cut(s)	59, 158, 517
MspI	CCGG	3 cut(s)	177, 300, 566
MspR9I	CCNGG	4 cut(s)	192, 252, 300, 599
MvaI	CCWGG	3 cut(s)	192, 252, 599
MvnI	CGCG	3 cut(s)	143, 333, 503
MwoI	GCNNNNNNNGC	9 cut(s)	14, 101, 110, 149, 182, 497, 536, 638, 647
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	4 cut(s)	64, 246, 495, 624
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	2 cut(s)	483, 526
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	650
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	9 cut(s)	7, 61, 112, 145, 490, 502, 519, 556, 564
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	481
Psp5II	RGGWCCY	1 cut(s)	481
Psp6I	CCWGG	3 cut(s)	190, 250, 597
PspGI	CCWGG	3 cut(s)	190, 250, 597
PspN4I	GGNNCC	2 cut(s)	483, 526
PspPI	GGNCC	1 cut(s)	481
PspPPI	RGGWCCY	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	246
PvuII	CAGCTG	2 cut(s)	59, 517
RsaI	GTAC	3 cut(s)	526, 592, 607
RsaNI	GTAC	3 cut(s)	525, 591, 606
SaqAI	TTAA	2 cut(s)	258, 618
SatI	GCNGC	9 cut(s)	6, 60, 111, 144, 489, 501, 518, 555, 563
Sau3AI	GATC	4 cut(s)	64, 246, 495, 624
Sau96I	GGNCC	1 cut(s)	481
ScaI	AGTACT	1 cut(s)	592
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	4 cut(s)	192, 252, 300, 599
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	518
SgrAI	CRCCGGYG	1 cut(s)	565
SinI	GGWCC	1 cut(s)	481
Sse9I	AATT	1 cut(s)	285
SseBI	AGGCCT	1 cut(s)	650
SsiI	CCGC	8 cut(s)	5, 110, 143, 158, 501, 528, 555, 563
SspMI	CTAG	2 cut(s)	282, 652
StuI	AGGCCT	1 cut(s)	650
StyD4I	CCNGG	4 cut(s)	190, 250, 298, 597
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	285
TatI	WGTACW	1 cut(s)	590
TauI	GCSGC	6 cut(s)	8, 113, 146, 503, 557, 565
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	2 cut(s)	258, 618
Tru9I	TTAA	2 cut(s)	258, 618
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	3 cut(s)	59, 488, 517
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	481
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	282, 652
ZrmI	AGTACT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.