Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Reverse (-)

19009905 .. 19011705

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGGCTGTCTTTGCTCTCTTTCTTGTGGCTTTTGCCACCGTCTTAGGCAGCTCTGCCGCTGATCCCGACATGCTTCAGGACATTTGCGTCGCCGACCTCACCGCCGCGGTGAAAGTCAATGGATTCGTCTGCAAGGACGCGGCAAATGCAACAGCAGAGGACTTTTTCTTCACCGGACTAGCCAAACCAGGCCTCACCAACAACACATTCGGCTCCTTGGTGACTTTAGCCAATGTCGAAAAAATCCCCGGCCTCAACACCCTCGGCATTTCGCTTGCCAGAATTGACTATGCCCCCGGCGGAATTAACCCACCCCACACTCACCCCAGAGCCACAGAAATTGTCTACGTTCTAGAAGGAGTATTGGACGTTGGATTTATCACCACAGCAAACAAGCTCATCAGCAAAACTATTAAGCAAGGTGAAGTCTTTGTGTTCCCCAAAGGGTTGGTTCACTTCCAGAACAACAATGGGAAGAGTCCGGCTTCGGTGATTTCCGCGTTTAACTCTCAGCTGCAGGGCACCCAGAACATCGCCCTCACGTTGTTCGCTGCCACGCCGGAGGTGCCGGATGATGTGCTGACCAAGACGTTCAAGGTGGGAACCAAGGAGGTTAACAAAATCAAGTCTAAGCTAGCACCGAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

218

Amino Acids

22.82

Weight (kDa)

7.75

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB1I	GGYRCC	2 cut(s)	524, 568
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	3 cut(s)	110, 143, 503
AciI	CCGC	8 cut(s)	5, 60, 105, 108, 110, 143, 303, 501
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	4 cut(s)	54, 400, 517, 637
AluI	AGCT	4 cut(s)	54, 400, 517, 637
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	3 cut(s)	193, 253, 648
ApeKI	GCWGC	3 cut(s)	51, 517, 554
AsuC2I	CCSGG	2 cut(s)	252, 300
AsuHPI	GGTGA	9 cut(s)	94, 124, 166, 190, 235, 317, 376, 437, 505
AsuNHI	GCTAGC	1 cut(s)	637
BaeGI	GKGCMC	1 cut(s)	527
BanI	GGYRCC	2 cut(s)	524, 568
BbvI	GCAGC	3 cut(s)	63, 504, 541
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	2 cut(s)	252, 300
BfaI	CTAG	4 cut(s)	182, 356, 638, 652
BfmI	CTRYAG	1 cut(s)	518
BisI	GCNGC	7 cut(s)	6, 52, 60, 108, 144, 518, 555
BlsI	GCNGC	7 cut(s)	7, 53, 61, 109, 145, 519, 556
Bme1390I	CCNGG	3 cut(s)	192, 252, 300
BmiI	GGNNCC	4 cut(s)	217, 526, 570, 607
BmrFI	CCNGG	3 cut(s)	192, 252, 300
BmtI	GCTAGC	1 cut(s)	641
BpuMI	CCSGG	2 cut(s)	252, 300
BsaJI	CCNNGG	6 cut(s)	108, 219, 250, 265, 298, 609
BsaWI	WCCGGW	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	6 cut(s)	108, 219, 250, 265, 298, 609
BseGI	GGATG	1 cut(s)	580
BseMII	CTCAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	3 cut(s)	63, 504, 541
Bsh1236I	CGCG	3 cut(s)	110, 143, 503
BshFI	GGCC	3 cut(s)	195, 255, 650
BshNI	GGYRCC	2 cut(s)	524, 568
BsiSI	CCGG	6 cut(s)	177, 252, 300, 485, 563, 572
BsnI	GGCC	3 cut(s)	195, 255, 650
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	8 cut(s)	5, 60, 105, 108, 110, 143, 303, 501
BspANI	GGCC	3 cut(s)	195, 255, 650
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	3 cut(s)	110, 143, 503
BspLI	GGNNCC	4 cut(s)	217, 526, 570, 607
BspMAI	CTGCAG	1 cut(s)	522
BspOI	GCTAGC	1 cut(s)	641
BspPI	GGATC	1 cut(s)	59
BspT107I	GGYRCC	2 cut(s)	524, 568
BssECI	CCNNGG	6 cut(s)	108, 219, 250, 265, 298, 609
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	219, 609
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	279, 639
BstDEI	CTNAG	3 cut(s)	46, 513, 633
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	3 cut(s)	110, 143, 503
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 149, 568, 647
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	3 cut(s)	190, 250, 298
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	527
BstUI	CGCG	3 cut(s)	110, 143, 503
BstV1I	GCAGC	3 cut(s)	63, 504, 541
BstXI	CCANNNNNNTGG	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	195, 255, 650
BtgI	CCRYGG	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	580
Cac8I	GCNNGC	2 cut(s)	279, 639
Cfr42I	CCGCGG	1 cut(s)	111
CseI	GACGC	2 cut(s)	79, 149
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	1 cut(s)	73
DdeI	CTNAG	3 cut(s)	46, 513, 633
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
EciI	GGCGGA	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	219, 609
Eco147I	AGGCCT	2 cut(s)	195, 650
Eco57I	CTGAAG	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	219, 609
ErhI	CCWWGG	2 cut(s)	219, 609
FaeI	CATG	1 cut(s)	76
FaiI	YATR	2 cut(s)	74, 294
FatI	CATG	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	7 cut(s)	6, 52, 60, 108, 144, 518, 555
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	7 cut(s)	6, 52, 60, 108, 144, 518, 555
FspBI	CTAG	4 cut(s)	182, 356, 638, 652
GluI	GCNGC	7 cut(s)	6, 52, 60, 108, 144, 518, 555
HaeIII	GGCC	3 cut(s)	195, 255, 650
HapII	CCGG	6 cut(s)	177, 252, 300, 485, 563, 572
HgaI	GACGC	2 cut(s)	79, 149
Hin1II	CATG	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	2 cut(s)	126, 481
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	6 cut(s)	177, 252, 300, 485, 563, 572
HphI	GGTGA	9 cut(s)	94, 124, 166, 190, 235, 317, 376, 437, 505
Hpy166II	GTNNAC	3 cut(s)	349, 457, 619
Hpy188III	TCNNGA	4 cut(s)	68, 80, 356, 463
Hpy8I	GTNNAC	3 cut(s)	349, 457, 619
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	353, 640
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	4 cut(s)	351, 372, 545, 593
HpyCH4V	TGCA	3 cut(s)	135, 152, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 149, 568, 647
HpyF3I	CTNAG	3 cut(s)	46, 513, 633
HpySE526I	ACGT	4 cut(s)	351, 372, 545, 593
Hsp92II	CATG	1 cut(s)	76
KspAI	GTTAAC	1 cut(s)	619
KspI	CCGCGG	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	3 cut(s)	63, 504, 541
MaeI	CTAG	4 cut(s)	182, 356, 638, 652
MaeII	ACGT	4 cut(s)	351, 372, 545, 593
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	163, 490
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	3 cut(s)	285, 306, 342
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	8 cut(s)	110, 154, 206, 266, 275, 551, 559, 607
MseI	TTAA	4 cut(s)	309, 417, 507, 618
MspA1I	CMGCKG	3 cut(s)	62, 110, 517
MspI	CCGG	6 cut(s)	177, 252, 300, 485, 563, 572
MspR9I	CCNGG	3 cut(s)	192, 252, 300
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	3 cut(s)	110, 143, 503
MwoI	GCNNNNNNNGC	4 cut(s)	14, 149, 568, 647
NciI	CCSGG	2 cut(s)	252, 300
NdeII	GATC	1 cut(s)	64
NheI	GCTAGC	1 cut(s)	637
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	4 cut(s)	217, 526, 570, 607
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	76
PceI	AGGCCT	2 cut(s)	195, 650
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	7 cut(s)	7, 53, 61, 109, 145, 519, 556
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	4 cut(s)	217, 526, 570, 607
PstI	CTGCAG	1 cut(s)	522
PvuII	CAGCTG	1 cut(s)	517
SacII	CCGCGG	1 cut(s)	111
SaqAI	TTAA	4 cut(s)	309, 417, 507, 618
SatI	GCNGC	7 cut(s)	6, 52, 60, 108, 144, 518, 555
Sau3AI	GATC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	3 cut(s)	192, 252, 300
SduI	GDGCHC	1 cut(s)	527
SfcI	CTRYAG	1 cut(s)	518
Sfr303I	CCGCGG	1 cut(s)	111
SgrBI	CCGCGG	1 cut(s)	111
Sse9I	AATT	3 cut(s)	285, 306, 342
SseBI	AGGCCT	2 cut(s)	195, 650
SsiI	CCGC	8 cut(s)	5, 60, 105, 108, 110, 143, 303, 501
SspMI	CTAG	4 cut(s)	182, 356, 638, 652
StuI	AGGCCT	2 cut(s)	195, 650
StyD4I	CCNGG	3 cut(s)	190, 250, 298
StyI	CCWWGG	2 cut(s)	219, 609
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	4 cut(s)	354, 375, 548, 596
TaqI	TCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	285, 306, 342
TauI	GCSGC	4 cut(s)	8, 62, 110, 146
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	4 cut(s)	309, 417, 507, 618
Tru9I	TTAA	4 cut(s)	309, 417, 507, 618
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	3 cut(s)	51, 517, 554
Tsp45I	GTSAC	1 cut(s)	223
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	4 cut(s)	182, 356, 638, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.