Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG094100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTATCCCTTCCTATTCGTTCATACACAGTTTCAAACCCGGTTTCTCAGTTTCCACATTTTTCTAGCTAGTCCTACTACTTTTGATAGGTACACAACAACAGCAGCAATATCGGCAAACATGGCCGCGGCTATCCTGGCAGTGTTTGTGATGACTTTTGCTATGGTCTTTGGCAACTCTGCTGCTGATCCGGACTTGCTTCAAGATATTTGTGTTGCAGACTTCACTTCCGCGACGAAAGTCAATGGGTTCACGTGCAAGGACGCAGCAAATGCAACAGCAGAGGACTTCTTCTTTGCCGGACTAGCAAAGCCAGGCCTCACCAACAACACATTTGGCTCTTTGGTGACTGCAGCCAATGTGCAGAAGATCCCAGGCCTCAACACCCTAGGCGTGTCGTTGGCCCGTATTGACTATGCTCCCGGAGGCATCAACCCACCTCACACTCACCCACGCGCCACCGAGATAGTCTTCGTGCTCGAAGGTTCGTTGGATGTTGGGTTCATTACCACAGCAAACAAGCTCATTTCCAAGACCATTGCCAAGGGTGAAGTGTTTGTGTTCCCAAAGGGGTTAGTTCACTTCCAGAAGAACAATGGTAAGGTCCCTGCTTCCGTGATCGCCGGGTTCAACTCTCAGCTGCAGGGTACCGCCAATATTGCCCTCACATTGTTCGCCGCCTCGCCACCGGTGGAGGATGATGTGTTGACCAGTACTTTCCAGGTTGGTACTAAAGAGATTAAGAAGATCAAGGCAAAGTTTGCACCCAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

258

Amino Acids

27.46

Weight (kDa)

8.83

Isoelectric Point (pI)

24.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	101 - 247	5.5e-50	Cupin
Cupin_2	PF07883	137 - 207	4.6e-11	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	647
AccB1I	GGYRCC	1 cut(s)	647
AccII	CGCG	3 cut(s)	128, 233, 456
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	5 cut(s)	126, 128, 231, 651, 678
AclWI	GGATC	2 cut(s)	182, 364
AcoI	YGGCCR	1 cut(s)	123
AcvI	CACGTG	1 cut(s)	255
AfaI	GTAC	4 cut(s)	92, 649, 715, 730
AgeI	ACCGGT	1 cut(s)	688
AgsI	TTSAA	3 cut(s)	35, 203, 631
AjnI	CCWGG	4 cut(s)	135, 313, 373, 720
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	3 cut(s)	68, 523, 640
AluI	AGCT	3 cut(s)	68, 523, 640
Alw21I	GWGCWC	1 cut(s)	480
AlwI	GGATC	2 cut(s)	182, 364
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	5 cut(s)	123, 316, 376, 402, 771
ApeKI	GCWGC	5 cut(s)	104, 182, 266, 353, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AsiGI	ACCGGT	1 cut(s)	688
Asp718I	GGTACC	1 cut(s)	647
AspA2I	CCTAGG	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	403, 604
AsuC2I	CCSGG	3 cut(s)	40, 423, 625
AsuHPI	GGTGA	4 cut(s)	313, 358, 440, 560
AvaII	GGWCC	1 cut(s)	604
AvrII	CCTAGG	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	647
BbrPI	CACGTG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	5 cut(s)	116, 169, 278, 365, 627
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BciT130I	CCWGG	4 cut(s)	137, 315, 375, 722
BciVI	GTATCC	1 cut(s)	15
BcnI	CCSGG	3 cut(s)	40, 423, 625
BfaI	CTAG	5 cut(s)	65, 69, 305, 389, 775
BfmI	CTRYAG	2 cut(s)	351, 641
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	8 cut(s)	105, 126, 129, 183, 267, 354, 641, 678
BlnI	CCTAGG	1 cut(s)	388
BlsI	GCNGC	8 cut(s)	106, 127, 130, 184, 268, 355, 642, 679
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	7 cut(s)	40, 137, 315, 375, 423, 625, 722
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	2 cut(s)	403, 604
BmiI	GGNNCC	2 cut(s)	606, 649
BmrFI	CCNGG	7 cut(s)	40, 137, 315, 375, 423, 625, 722
BmsI	GCATC	1 cut(s)	438
BoxI	GACNNNNGTC	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	463
BpuMI	CCSGG	3 cut(s)	40, 423, 625
BsaAI	YACGTR	1 cut(s)	255
BsaJI	CCNNGG	5 cut(s)	126, 373, 388, 543, 768
BsaWI	WCCGGW	2 cut(s)	190, 688
Bse118I	RCCGGY	1 cut(s)	688
Bse1I	ACTGG	1 cut(s)	711
Bse3DI	GCAATG	1 cut(s)	537
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	4 cut(s)	137, 315, 375, 722
BseDI	CCNNGG	5 cut(s)	126, 373, 388, 543, 768
BseGI	GGATG	2 cut(s)	499, 703
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	2 cut(s)	61, 650
BseNI	ACTGG	1 cut(s)	711
BseXI	GCAGC	5 cut(s)	116, 169, 278, 365, 627
BsgI	GTGCAG	1 cut(s)	383
Bsh1236I	CGCG	3 cut(s)	128, 233, 456
BshFI	GGCC	5 cut(s)	125, 318, 378, 404, 773
BshNI	GGYRCC	1 cut(s)	647
BshTI	ACCGGT	1 cut(s)	688
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	6 cut(s)	40, 191, 300, 423, 624, 689
BslFI	GGGAC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	5 cut(s)	125, 318, 378, 404, 773
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	187, 369, 618, 747
BspACI	CCGC	5 cut(s)	126, 128, 231, 651, 678
BspANI	GGCC	5 cut(s)	125, 318, 378, 404, 773
BspCNI	CTCAG	2 cut(s)	60, 649
BspEI	TCCGGA	1 cut(s)	190
BspFNI	CGCG	3 cut(s)	128, 233, 456
BspLI	GGNNCC	2 cut(s)	606, 649
BspMAI	CTGCAG	2 cut(s)	355, 645
BspPI	GGATC	2 cut(s)	182, 364
BspT107I	GGYRCC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	537
BsrFI	RCCGGY	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	711
BssAI	RCCGGY	1 cut(s)	688
BssECI	CCNNGG	5 cut(s)	126, 373, 388, 543, 768
BssMI	GATC	4 cut(s)	187, 369, 618, 747
BssT1I	CCWWGG	3 cut(s)	388, 543, 768
Bst2UI	CCWGG	4 cut(s)	137, 315, 375, 722
Bst4CI	ACNGT	1 cut(s)	30
BstAPI	GCANNNNNTGC	2 cut(s)	272, 761
BstBAI	YACGTR	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	47, 636
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	499, 703
BstFNI	CGCG	3 cut(s)	128, 233, 456
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	4 cut(s)	190, 372, 621, 750
BstMBI	GATC	4 cut(s)	187, 369, 618, 747
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 122, 137, 272, 305, 659, 761, 770
BstNI	CCWGG	4 cut(s)	137, 315, 375, 722
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	7 cut(s)	38, 135, 313, 373, 421, 623, 720
BstSFI	CTRYAG	2 cut(s)	351, 641
BstUI	CGCG	3 cut(s)	128, 233, 456
BstV1I	GCAGC	5 cut(s)	116, 169, 278, 365, 627
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	5 cut(s)	125, 318, 378, 404, 773
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	499, 703
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	688
Cfr13I	GGNCC	2 cut(s)	403, 604
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	4 cut(s)	91, 648, 714, 729
CspAI	ACCGGT	1 cut(s)	688
CviAII	CATG	1 cut(s)	121
CviQI	GTAC	4 cut(s)	91, 648, 714, 729
DdeI	CTNAG	2 cut(s)	47, 636
DpnI	GATC	4 cut(s)	189, 371, 620, 749
DpnII	GATC	4 cut(s)	187, 369, 618, 747
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	3 cut(s)	388, 543, 768
Eco147I	AGGCCT	3 cut(s)	318, 378, 773
Eco47I	GGWCC	1 cut(s)	604
Eco72I	CACGTG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	4 cut(s)	135, 313, 373, 720
EcoT14I	CCWWGG	3 cut(s)	388, 543, 768
ErhI	CCWWGG	3 cut(s)	388, 543, 768
FaeI	CATG	1 cut(s)	124
FaiI	YATR	4 cut(s)	24, 122, 164, 417
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	8 cut(s)	105, 126, 129, 183, 267, 354, 641, 678
FokI	GGATG	2 cut(s)	506, 710
Fsp4HI	GCNGC	8 cut(s)	105, 126, 129, 183, 267, 354, 641, 678
FspBI	CTAG	5 cut(s)	65, 69, 305, 389, 775
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	8 cut(s)	105, 126, 129, 183, 267, 354, 641, 678
HaeIII	GGCC	5 cut(s)	125, 318, 378, 404, 773
HapII	CCGG	6 cut(s)	40, 191, 300, 423, 624, 689
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HpaII	CCGG	6 cut(s)	40, 191, 300, 423, 624, 689
HphI	GGTGA	4 cut(s)	313, 358, 440, 560
Hpy166II	GTNNAC	4 cut(s)	93, 252, 580, 708
Hpy188III	TCNNGA	3 cut(s)	191, 203, 586
Hpy8I	GTNNAC	4 cut(s)	93, 252, 580, 708
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	19, 476
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	7 cut(s)	218, 258, 275, 353, 364, 643, 764
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 122, 137, 272, 305, 659, 761, 770
HpyF3I	CTNAG	2 cut(s)	47, 636
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	456
Kpn2I	TCCGGA	1 cut(s)	190
KpnI	GGTACC	1 cut(s)	651
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	187, 369, 618, 747
LmnI	GCTCC	1 cut(s)	424
Lsp1109I	GCAGC	5 cut(s)	116, 169, 278, 365, 627
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	5 cut(s)	65, 69, 305, 389, 775
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	4 cut(s)	189, 371, 620, 749
MboI	GATC	4 cut(s)	187, 369, 618, 747
MboII	GAAGA	5 cut(s)	283, 379, 463, 601, 757
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	480
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	8 cut(s)	277, 329, 389, 419, 450, 674, 688, 691
MroI	TCCGGA	1 cut(s)	190
MseI	TTAA	1 cut(s)	741
MspA1I	CMGCKG	2 cut(s)	128, 640
MspI	CCGG	6 cut(s)	40, 191, 300, 423, 624, 689
MspR9I	CCNGG	7 cut(s)	40, 137, 315, 375, 423, 625, 722
MvaI	CCWGG	4 cut(s)	137, 315, 375, 722
MvnI	CGCG	3 cut(s)	128, 233, 456
MwoI	GCNNNNNNNGC	8 cut(s)	113, 122, 137, 272, 305, 659, 761, 770
NciI	CCSGG	3 cut(s)	40, 423, 625
NdeII	GATC	4 cut(s)	187, 369, 618, 747
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	606, 649
NmuCI	GTSAC	1 cut(s)	346
PceI	AGGCCT	3 cut(s)	318, 378, 773
PfoI	TCCNGGA	1 cut(s)	421
PinAI	ACCGGT	1 cut(s)	688
PkrI	GCNGC	8 cut(s)	106, 127, 130, 184, 268, 355, 642, 679
PmaCI	CACGTG	1 cut(s)	255
PmlI	CACGTG	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	255
PpuMI	RGGWCCY	1 cut(s)	604
PshAI	GACNNNNGTC	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	4 cut(s)	135, 313, 373, 720
PspCI	CACGTG	1 cut(s)	255
PspGI	CCWGG	4 cut(s)	135, 313, 373, 720
PspN4I	GGNNCC	2 cut(s)	606, 649
PspPI	GGNCC	2 cut(s)	403, 604
PspPPI	RGGWCCY	1 cut(s)	604
PstI	CTGCAG	2 cut(s)	355, 645
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	640
RsaI	GTAC	4 cut(s)	92, 649, 715, 730
RsaNI	GTAC	4 cut(s)	91, 648, 714, 729
SacII	CCGCGG	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	8 cut(s)	105, 126, 129, 183, 267, 354, 641, 678
Sau3AI	GATC	4 cut(s)	187, 369, 618, 747
Sau96I	GGNCC	2 cut(s)	403, 604
ScaI	AGTACT	1 cut(s)	715
ScrFI	CCNGG	7 cut(s)	40, 137, 315, 375, 423, 625, 722
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	9 cut(s)	70, 92, 257, 442, 487, 525, 606, 642, 726
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	2 cut(s)	351, 641
Sfr303I	CCGCGG	1 cut(s)	129
SgrAI	CRCCGGYG	1 cut(s)	688
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	604
SseBI	AGGCCT	3 cut(s)	318, 378, 773
SsiI	CCGC	5 cut(s)	126, 128, 231, 651, 678
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	5 cut(s)	65, 69, 305, 389, 775
StuI	AGGCCT	3 cut(s)	318, 378, 773
StyD4I	CCNGG	7 cut(s)	38, 135, 313, 373, 421, 623, 720
StyI	CCWWGG	3 cut(s)	388, 543, 768
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	480
TatI	WGTACW	1 cut(s)	713
TauI	GCSGC	3 cut(s)	128, 131, 680
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	5 cut(s)	104, 182, 266, 353, 640
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	11, 493
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmaJI	CCTAGG	1 cut(s)	388
XspI	CTAG	5 cut(s)	65, 69, 305, 389, 775
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.