Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Forward (+)

5198041 .. 5199658

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCAGCAGCTATCTTGGCAATGTTTGTGATGACTTTTGCTGTGGTCGTTGGCAACTCTGCTGCTGATCCAGACATGCTTCAAGATATCTGTGTTGCAGACTTCACTTCTGCGGCGAAAATGAATGGTTTCGCTTGCAAGGACGCGGCAAATGCAACAGCGGAGGACTTCTTCTTCGCCGGACTGGCCAAGCCAGGACTCACCAACAACACCTTCGGCTCTTTGGTGACTGCAGCCAATGTGCAGAAGATTCCAGGGCTTAACACTCTTGGCGTGTCGATGGCTCGCATTGACTATGCTCCCGGAGGCATCAACCCACCTCACACTCACCCACGCGCCACGGAAATAGTCTATGTTCTTGAAGGTGCACTGAATGTTGGGTTCATCACCACAGCAAACAAGCTCATTTCCAAGACCATTGCCAAAGGTGAGGTGTTTGTGTTTCCAAAGGGGTTGGTTCATTTCCAGAAGAACAATGGCAAGGTCCCTGCTGCTGTGATCGCCGGATTTAACTCTCAGTTGCAGGGTACCGCCAACATTGCCCTCACCTTGTTTGCCGCCACACCTCCAGTGGCAGATGATGTGTTGACTAAGACATTCCAAGTTGGCACCAAGCAGATCGAGAAGATCAAGTCAAGGCTTGCACCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

218

Amino Acids

22.67

Weight (kDa)

9.1

Isoelectric Point (pI)

24.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	61 - 207	1.6e-50	Cupin
Cupin_2	PF07883	97 - 167	2.6e-11	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	2 cut(s)	527, 608
AccII	CGCG	2 cut(s)	146, 336
AciI	CCGC	5 cut(s)	113, 146, 161, 531, 558
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	186
AfaI	GTAC	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	83, 362
AjnI	CCWGG	2 cut(s)	193, 253
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	11, 403
AluI	AGCT	2 cut(s)	11, 403
Alw21I	GWGCWC	1 cut(s)	370
Alw44I	GTGCAC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	186
ApaLI	GTGCAC	1 cut(s)	366
ApeKI	GCWGC	5 cut(s)	5, 8, 62, 233, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	128
Asp718I	GGTACC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	484
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	6 cut(s)	193, 238, 320, 379, 440, 538
AvaII	GGWCC	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	370
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	527, 608
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	5 cut(s)	17, 20, 49, 245, 478
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	2 cut(s)	195, 255
BcnI	CCSGG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	231
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	8 cut(s)	6, 9, 63, 114, 147, 234, 492, 558
BlsI	GCNGC	8 cut(s)	7, 10, 64, 115, 148, 235, 493, 559
Bme1390I	CCNGG	3 cut(s)	195, 255, 303
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	3 cut(s)	486, 529, 610
BmrFI	CCNGG	3 cut(s)	195, 255, 303
BmsI	GCATC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	254, 339
Bse1I	ACTGG	2 cut(s)	189, 569
Bse3DI	GCAATG	3 cut(s)	27, 417, 537
BseBI	CCWGG	2 cut(s)	195, 255
BseDI	CCNNGG	2 cut(s)	254, 339
BseMI	GCAATG	3 cut(s)	27, 417, 537
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	2 cut(s)	189, 569
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	5 cut(s)	17, 20, 49, 245, 478
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	2 cut(s)	146, 336
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	2 cut(s)	527, 608
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	3 cut(s)	180, 303, 504
BslFI	GGGAC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	67, 498, 618, 627
BspACI	CCGC	5 cut(s)	113, 146, 161, 531, 558
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	529
BspFNI	CGCG	2 cut(s)	146, 336
BspLI	GGNNCC	3 cut(s)	486, 529, 610
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	2 cut(s)	527, 608
BsrDI	GCAATG	3 cut(s)	27, 417, 537
BsrI	ACTGG	2 cut(s)	189, 569
BssECI	CCNNGG	2 cut(s)	254, 339
BssMI	GATC	4 cut(s)	67, 498, 618, 627
Bst2UI	CCWGG	2 cut(s)	195, 255
BstC8I	GCNNGC	3 cut(s)	136, 286, 642
BstDEI	CTNAG	2 cut(s)	516, 591
BstDSI	CCRYGG	1 cut(s)	339
BstFNI	CGCG	2 cut(s)	146, 336
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	4 cut(s)	70, 501, 621, 630
BstMBI	GATC	4 cut(s)	67, 498, 618, 627
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 152, 185, 500, 539
BstNI	CCWGG	2 cut(s)	195, 255
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	3 cut(s)	193, 253, 301
BstSFI	CTRYAG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	2 cut(s)	146, 336
BstV1I	GCAGC	5 cut(s)	17, 20, 49, 245, 478
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	368, 576
Cac8I	GCNNGC	3 cut(s)	136, 286, 642
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	484
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	9 cut(s)	11, 188, 193, 219, 236, 259, 284, 403, 640
CviKI_1	RGCY	9 cut(s)	11, 188, 193, 219, 236, 259, 284, 403, 640
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	2 cut(s)	516, 591
DpnI	GATC	4 cut(s)	69, 500, 620, 629
DpnII	GATC	4 cut(s)	67, 498, 618, 627
EaeI	YGGCCR	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	193, 253
EcoRV	GATATC	1 cut(s)	88
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 297, 354
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	8 cut(s)	6, 9, 63, 114, 147, 234, 492, 558
Fsp4HI	GCNGC	8 cut(s)	6, 9, 63, 114, 147, 234, 492, 558
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	8 cut(s)	6, 9, 63, 114, 147, 234, 492, 558
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	3 cut(s)	180, 303, 504
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	2 cut(s)	198, 250
HpaII	CCGG	3 cut(s)	180, 303, 504
HphI	GGTGA	6 cut(s)	193, 238, 320, 379, 440, 538
Hpy166II	GTNNAC	2 cut(s)	368, 588
Hpy188III	TCNNGA	5 cut(s)	71, 83, 359, 466, 622
Hpy8I	GTNNAC	2 cut(s)	368, 588
HpyAV	CCTTC	2 cut(s)	223, 356
HpyCH4V	TGCA	8 cut(s)	98, 138, 155, 233, 244, 368, 523, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 152, 185, 500, 539
HpyF3I	CTNAG	2 cut(s)	516, 591
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	67, 498, 618, 627
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	5 cut(s)	17, 20, 49, 245, 478
LweI	GCATC	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	69, 500, 620, 629
MboI	GATC	4 cut(s)	67, 498, 618, 627
MboII	GAAGA	5 cut(s)	163, 166, 259, 481, 637
MhlI	GDGCHC	1 cut(s)	370
MlsI	TGGCCA	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	6 cut(s)	157, 299, 330, 424, 554, 576
Mox20I	TGGCCA	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	2 cut(s)	261, 510
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	3 cut(s)	180, 303, 504
MspR9I	CCNGG	3 cut(s)	195, 255, 303
MvaI	CCWGG	2 cut(s)	195, 255
MvnI	CGCG	2 cut(s)	146, 336
MwoI	GCNNNNNNNGC	5 cut(s)	17, 152, 185, 500, 539
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	4 cut(s)	67, 498, 618, 627
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	3 cut(s)	486, 529, 610
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	250
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	8 cut(s)	7, 10, 64, 115, 148, 235, 493, 559
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PpuMI	RGGWCCY	1 cut(s)	484
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	2 cut(s)	193, 253
PspGI	CCWGG	2 cut(s)	193, 253
PspN4I	GGNNCC	3 cut(s)	486, 529, 610
PspPI	GGNCC	1 cut(s)	484
PspPPI	RGGWCCY	1 cut(s)	484
PstI	CTGCAG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	261, 510
SatI	GCNGC	8 cut(s)	6, 9, 63, 114, 147, 234, 492, 558
Sau3AI	GATC	4 cut(s)	67, 498, 618, 627
Sau96I	GGNCC	1 cut(s)	484
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	3 cut(s)	195, 255, 303
SduI	GDGCHC	1 cut(s)	370
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	484
SsiI	CCGC	5 cut(s)	113, 146, 161, 531, 558
StyD4I	CCNGG	3 cut(s)	193, 253, 301
TaqI	TCGA	2 cut(s)	278, 621
TauI	GCSGC	3 cut(s)	116, 149, 560
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	261, 510
Tru9I	TTAA	2 cut(s)	261, 510
TscAI	CASTG	2 cut(s)	375, 576
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	5 cut(s)	5, 8, 62, 233, 491
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	137, 373, 449
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	2 cut(s)	375, 576
VneI	GTGCAC	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	484
XceI	RCATGY	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	2 cut(s)	473, 568
XmnI	GAANNNNTTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.