Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Reverse (-)

27447570 .. 27449224

Gene Structure 1655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G302700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGGCTCTCTCGGCACTACTTGTTCTGGCTTTTGCCATGGTCTTTGGCAACTCTGCTGCTGATCCTGACTTGCTTCAAGACATTTGTGTCGCCGACCTCGCTGCCGGGGTGAAAGTCAATGGGTTCGTCTGTAAGGACGCAGCAAATGCAACAGCAGAGGACTTCTTCACCGCTGGGCTAGCCAAACCAGGCCTCACCAACAACACCTTTGGCTCACTGGTGACTGCAGCCAATGTGCTCAAAGTCCCAGGCCTCAACACTCTCGGAGTCTCACTGGCTCGAATCGACTATGGCCCCGGTGGCATTAACCCACCTCACACTCACCCCAGAGCTACAGAAATTGTGTTTGTGCTTGAAGGTGAGTTGGACGTTGGGTTTATAACCACAGCAAACAAGCTCATCTCCAAGACCATCAAGAAAGGTGAAGTCTTTGTGTTCCCAAAAGGGTTGGTTCACTTCCAGAAAAACAAAGGGAAAGTGCCTGCTGCTGTGATAGCTGGATTTAACTCTCAGCTGCAGGGCACCGTGAACATTGCTCTCACATTGTTCGCCGCCACACCGGACGTGCCGGATCACGTCTTGACCCAGACATTCCAGGTCGGCACCAAGGAGGTTGAGAAAATCAAGTCAAGGCTTGCTCCCAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

218

Amino Acids

22.62

Weight (kDa)

8.52

Isoelectric Point (pI)

14.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB1I	GGYRCC	2 cut(s)	524, 605
AciI	CCGC	3 cut(s)	5, 174, 555
AclWI	GGATC	2 cut(s)	59, 582
AgsI	TTSAA	2 cut(s)	80, 359
AjiI	CACGTC	2 cut(s)	568, 580
AjnI	CCWGG	3 cut(s)	190, 250, 597
AluBI	AGCT	4 cut(s)	335, 400, 500, 517
AluI	AGCT	4 cut(s)	335, 400, 500, 517
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	2 cut(s)	59, 582
AoxI	GGCC	4 cut(s)	193, 253, 295, 648
ApeKI	GCWGC	6 cut(s)	59, 104, 143, 230, 488, 517
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	2 cut(s)	109, 300
AsuHPI	GGTGA	7 cut(s)	124, 163, 190, 235, 317, 374, 437
AsuNHI	GCTAGC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	527
BanI	GGYRCC	2 cut(s)	524, 605
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	6 cut(s)	46, 91, 155, 242, 475, 504
BccI	CCATC	1 cut(s)	422
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	3 cut(s)	192, 252, 599
BcnI	CCSGG	2 cut(s)	109, 300
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	2 cut(s)	182, 652
BfmI	CTRYAG	3 cut(s)	228, 336, 518
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	8 cut(s)	6, 60, 105, 144, 231, 489, 518, 555
BlsI	GCNGC	8 cut(s)	7, 61, 106, 145, 232, 490, 519, 556
Bme1390I	CCNGG	5 cut(s)	109, 192, 252, 300, 599
BmgBI	CACGTC	2 cut(s)	568, 580
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	3 cut(s)	298, 526, 607
BmrFI	CCNGG	5 cut(s)	109, 192, 252, 300, 599
BmtI	GCTAGC	1 cut(s)	185
BpuMI	CCSGG	2 cut(s)	109, 300
BsaJI	CCNNGG	6 cut(s)	39, 108, 250, 298, 609, 645
BsaWI	WCCGGW	1 cut(s)	562
Bse1I	ACTGG	2 cut(s)	225, 282
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	3 cut(s)	192, 252, 599
BseDI	CCNNGG	6 cut(s)	39, 108, 250, 298, 609, 645
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	2 cut(s)	225, 282
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	6 cut(s)	46, 91, 155, 242, 475, 504
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	4 cut(s)	195, 255, 297, 650
BshNI	GGYRCC	2 cut(s)	524, 605
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	4 cut(s)	108, 300, 563, 572
BslFI	GGGAC	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	4 cut(s)	195, 255, 297, 650
Bsp1286I	GDGCHC	2 cut(s)	243, 527
Bsp143I	GATC	2 cut(s)	64, 574
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	3 cut(s)	5, 174, 555
BspANI	GGCC	4 cut(s)	195, 255, 297, 650
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	3 cut(s)	298, 526, 607
BspMAI	CTGCAG	2 cut(s)	232, 522
BspOI	GCTAGC	1 cut(s)	185
BspPI	GGATC	2 cut(s)	59, 582
BspT107I	GGYRCC	2 cut(s)	524, 605
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	225, 282
BssECI	CCNNGG	6 cut(s)	39, 108, 250, 298, 609, 645
BssMI	GATC	2 cut(s)	64, 574
BssT1I	CCWWGG	3 cut(s)	39, 609, 645
Bst2UI	CCWGG	3 cut(s)	192, 252, 599
Bst4CI	ACNGT	1 cut(s)	529
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	183, 486, 639
BstDEI	CTNAG	1 cut(s)	513
BstDSI	CCRYGG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	67, 577
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	64, 574
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 101, 149, 182, 303, 497, 647
BstNI	CCWGG	3 cut(s)	192, 252, 599
BstSCI	CCNGG	5 cut(s)	107, 190, 250, 298, 597
BstSFI	CTRYAG	3 cut(s)	228, 336, 518
BstSLI	GKGCMC	1 cut(s)	527
BstV1I	GCAGC	6 cut(s)	46, 91, 155, 242, 475, 504
BsuRI	GGCC	4 cut(s)	195, 255, 297, 650
BtgI	CCRYGG	1 cut(s)	39
BtrI	CACGTC	2 cut(s)	568, 580
BtsIMutI	CAGTG	2 cut(s)	218, 275
Cac8I	GCNNGC	3 cut(s)	183, 486, 639
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	149
CviAII	CATG	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	2 cut(s)	66, 576
DpnII	GATC	2 cut(s)	64, 574
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eco130I	CCWWGG	3 cut(s)	39, 609, 645
Eco147I	AGGCCT	3 cut(s)	195, 255, 650
EcoRII	CCWGG	3 cut(s)	190, 250, 597
EcoT14I	CCWWGG	3 cut(s)	39, 609, 645
ErhI	CCWWGG	3 cut(s)	39, 609, 645
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	41, 294, 383
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	8 cut(s)	6, 60, 105, 144, 231, 489, 518, 555
Fsp4HI	GCNGC	8 cut(s)	6, 60, 105, 144, 231, 489, 518, 555
FspBI	CTAG	2 cut(s)	182, 652
GluI	GCNGC	8 cut(s)	6, 60, 105, 144, 231, 489, 518, 555
GsaI	CCCAGC	1 cut(s)	180
HaeIII	GGCC	4 cut(s)	195, 255, 297, 650
HapII	CCGG	4 cut(s)	108, 300, 563, 572
HgaI	GACGC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	43
HinfI	GANTC	2 cut(s)	270, 285
HpaII	CCGG	4 cut(s)	108, 300, 563, 572
HphI	GGTGA	7 cut(s)	124, 163, 190, 235, 317, 374, 437
Hpy166II	GTNNAC	2 cut(s)	457, 532
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	5 cut(s)	68, 80, 418, 463, 583
Hpy8I	GTNNAC	2 cut(s)	457, 532
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4IV	ACGT	3 cut(s)	372, 567, 579
HpyCH4V	TGCA	3 cut(s)	152, 230, 520
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 101, 149, 182, 303, 497, 647
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	3 cut(s)	372, 567, 579
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	64, 574
LmnI	GCTCC	1 cut(s)	646
Lsp1109I	GCAGC	6 cut(s)	46, 91, 155, 242, 475, 504
MaeI	CTAG	2 cut(s)	182, 652
MaeII	ACGT	3 cut(s)	372, 567, 579
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	66, 576
MboI	GATC	2 cut(s)	64, 574
MboII	GAAGA	1 cut(s)	160
MhlI	GDGCHC	2 cut(s)	243, 527
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	6 cut(s)	110, 154, 206, 266, 327, 607
MseI	TTAA	2 cut(s)	309, 507
MspA1I	CMGCKG	2 cut(s)	176, 517
MspI	CCGG	4 cut(s)	108, 300, 563, 572
MspR9I	CCNGG	5 cut(s)	109, 192, 252, 300, 599
MvaI	CCWGG	3 cut(s)	192, 252, 599
MwoI	GCNNNNNNNGC	7 cut(s)	14, 101, 149, 182, 303, 497, 647
NciI	CCSGG	2 cut(s)	109, 300
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	64, 574
NheI	GCTAGC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	3 cut(s)	298, 526, 607
NmuCI	GTSAC	1 cut(s)	223
PceI	AGGCCT	3 cut(s)	195, 255, 650
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	8 cut(s)	7, 61, 106, 145, 232, 490, 519, 556
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	383
Psp6I	CCWGG	3 cut(s)	190, 250, 597
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	3 cut(s)	190, 250, 597
PspN4I	GGNNCC	3 cut(s)	298, 526, 607
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	2 cut(s)	232, 522
PvuII	CAGCTG	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	309, 507
SatI	GCNGC	8 cut(s)	6, 60, 105, 144, 231, 489, 518, 555
Sau3AI	GATC	2 cut(s)	64, 574
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	5 cut(s)	109, 192, 252, 300, 599
SduI	GDGCHC	2 cut(s)	243, 527
SfcI	CTRYAG	3 cut(s)	228, 336, 518
Sse9I	AATT	1 cut(s)	342
SseBI	AGGCCT	3 cut(s)	195, 255, 650
SsiI	CCGC	3 cut(s)	5, 174, 555
SspMI	CTAG	2 cut(s)	182, 652
StuI	AGGCCT	3 cut(s)	195, 255, 650
StyD4I	CCNGG	5 cut(s)	107, 190, 250, 298, 597
StyI	CCWWGG	3 cut(s)	39, 609, 645
TaaI	ACNGT	1 cut(s)	529
TaiI	ACGT	3 cut(s)	375, 570, 582
TaqI	TCGA	2 cut(s)	283, 288
TasI	AATT	1 cut(s)	342
TauI	GCSGC	2 cut(s)	8, 557
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	309, 507
Tru9I	TTAA	2 cut(s)	309, 507
TscAI	CASTG	2 cut(s)	225, 282
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	6 cut(s)	59, 104, 143, 230, 488, 517
Tsp45I	GTSAC	1 cut(s)	223
TspRI	CASTG	2 cut(s)	225, 282
XspI	CTAG	2 cut(s)	182, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.