Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Forward (+)

27513678 .. 27518077

Gene Structure 4400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1184000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCTTCAGGACATTTGCGTCCCCGACCTCACCGCCGCGGTGAAAGTCAATGGATTCGTCTGCAAGGACGCAGCAAATGCAACAGCAGAGGACTTTTTCTTCACCGGACTAGCCAAACCAGGCCTCACCAACAACACATTCGGCTCCTTGGTGACTTTAGCCAATGTCGAAAAAATCCCCGGCCTCAACACCCTCGGCGTTTCGCTTGCCAGAATCGACTATGCCCCCGGCGGAATTAACCCACCCCACACTCACCCCAGAGCCACAGAAATTGTATACGTTCTTGAAGGAGAATTGGATGTTGGGTTTATTACCACAGCAAACAAGCTCATCAGAAAAACTATTCAGCAAGGTGAAGTCTTTGTGTTCCCCAAAGGGTTGGTTCACTTCCAAAACAACAATGGGAAGAGCCCGGCTTCCATGATTGCCGCCTTCAACTCTCAGCTGCAGGGCAGAGTGAACATCGCCCTCACATTGTTCGCTGCCACGCCGGAGGTGCCGGAGAATGTGCTGACCAAGACGTTCCAGGTGGGAACCAAGCAGGTTGACAAAATCAAGTCTAAGCTAGCACCCAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

194

Amino Acids

20.62

Weight (kDa)

8.89

Isoelectric Point (pI)

21.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	36 - 182	7.7e-53	Cupin
Cupin_2	PF07883	72 - 144	3.2e-13	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	1 cut(s)	38
AciI	CCGC	5 cut(s)	33, 36, 38, 231, 429
AgsI	TTSAA	2 cut(s)	287, 436
AjnI	CCWGG	2 cut(s)	118, 525
AjuI	GAANNNNNNNTTGG	4 cut(s)	122, 154, 285, 317
AluBI	AGCT	3 cut(s)	328, 445, 565
AluI	AGCT	3 cut(s)	328, 445, 565
AoxI	GGCC	3 cut(s)	121, 181, 576
ApeKI	GCWGC	3 cut(s)	71, 445, 482
AsuC2I	CCSGG	3 cut(s)	180, 228, 413
AsuHPI	GGTGA	7 cut(s)	22, 52, 94, 118, 163, 245, 365
AsuNHI	GCTAGC	1 cut(s)	565
BanI	GGYRCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	413
BbvI	GCAGC	3 cut(s)	83, 432, 469
BciT130I	CCWGG	2 cut(s)	120, 527
BcnI	CCSGG	3 cut(s)	180, 228, 413
BfaI	CTAG	3 cut(s)	110, 566, 580
BfmI	CTRYAG	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	5 cut(s)	36, 72, 429, 446, 483
BlsI	GCNGC	5 cut(s)	37, 73, 430, 447, 484
Bme1390I	CCNGG	5 cut(s)	120, 180, 228, 413, 527
BmiI	GGNNCC	3 cut(s)	145, 498, 535
BmrFI	CCNGG	5 cut(s)	120, 180, 228, 413, 527
BmtI	GCTAGC	1 cut(s)	569
BpuMI	CCSGG	3 cut(s)	180, 228, 413
BsaJI	CCNNGG	6 cut(s)	36, 147, 178, 193, 226, 573
BsaWI	WCCGGW	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	120, 527
BseDI	CCNNGG	6 cut(s)	36, 147, 178, 193, 226, 573
BseGI	GGATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	455
BseXI	GCAGC	3 cut(s)	83, 432, 469
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	123, 183, 578
BshNI	GGYRCC	1 cut(s)	496
BsiSI	CCGG	6 cut(s)	105, 180, 228, 413, 491, 500
BslFI	GGGAC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	123, 183, 578
Bsp1286I	GDGCHC	1 cut(s)	413
BspACI	CCGC	5 cut(s)	33, 36, 38, 231, 429
BspANI	GGCC	3 cut(s)	123, 183, 578
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	3 cut(s)	145, 498, 535
BspMAI	CTGCAG	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	532
BspOI	GCTAGC	1 cut(s)	569
BspQI	GCTCTTC	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	496
BssECI	CCNNGG	6 cut(s)	36, 147, 178, 193, 226, 573
BssNAI	GTATAC	1 cut(s)	277
BssT1I	CCWWGG	2 cut(s)	147, 573
Bst1107I	GTATAC	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	120, 527
Bst6I	CTCTTC	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	207, 567
BstDEI	CTNAG	2 cut(s)	441, 561
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 496, 575
BstNI	CCWGG	2 cut(s)	120, 527
BstSCI	CCNGG	5 cut(s)	118, 178, 226, 411, 525
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	83, 432, 469
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstZ17I	GTATAC	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	123, 183, 578
BtgI	CCRYGG	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	2 cut(s)	207, 567
Cfr42I	CCGCGG	1 cut(s)	39
CseI	GACGC	2 cut(s)	7, 77
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	441, 561
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	147, 573
Eco147I	AGGCCT	2 cut(s)	123, 578
Eco24I	GRGCYC	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	118, 525
EcoT14I	CCWWGG	2 cut(s)	147, 573
EcoT38I	GRGCYC	1 cut(s)	413
ErhI	CCWWGG	2 cut(s)	147, 573
FaeI	CATG	1 cut(s)	424
FaiI	YATR	3 cut(s)	222, 277, 422
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	5 cut(s)	36, 72, 429, 446, 483
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	5 cut(s)	36, 72, 429, 446, 483
FspBI	CTAG	3 cut(s)	110, 566, 580
GluI	GCNGC	5 cut(s)	36, 72, 429, 446, 483
HaeIII	GGCC	3 cut(s)	123, 183, 578
HapII	CCGG	6 cut(s)	105, 180, 228, 413, 491, 500
HgaI	GACGC	2 cut(s)	7, 77
Hin1II	CATG	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	2 cut(s)	54, 213
HpaII	CCGG	6 cut(s)	105, 180, 228, 413, 491, 500
HphI	GGTGA	7 cut(s)	22, 52, 94, 118, 163, 245, 365
Hpy166II	GTNNAC	4 cut(s)	277, 385, 460, 547
Hpy188I	TCNGA	1 cut(s)	335
Hpy188III	TCNNGA	2 cut(s)	8, 284
Hpy8I	GTNNAC	4 cut(s)	277, 385, 460, 547
HpyAV	CCTTC	2 cut(s)	281, 442
HpyCH4IV	ACGT	2 cut(s)	279, 521
HpyCH4V	TGCA	3 cut(s)	63, 80, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 496, 575
HpyF3I	CTNAG	2 cut(s)	441, 561
HpySE526I	ACGT	2 cut(s)	279, 521
Hsp92II	CATG	1 cut(s)	424
KspI	CCGCGG	1 cut(s)	39
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	3 cut(s)	83, 432, 469
MaeI	CTAG	3 cut(s)	110, 566, 580
MaeII	ACGT	2 cut(s)	279, 521
MaeIII	GTNAC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	91, 418
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	3 cut(s)	234, 270, 293
MnlI	CCTC	7 cut(s)	38, 82, 134, 194, 203, 479, 487
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	2 cut(s)	38, 445
MspI	CCGG	6 cut(s)	105, 180, 228, 413, 491, 500
MspR9I	CCNGG	5 cut(s)	120, 180, 228, 413, 527
MvaI	CCWGG	2 cut(s)	120, 527
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	77, 496, 575
NciI	CCSGG	3 cut(s)	180, 228, 413
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	3 cut(s)	145, 498, 535
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	151
PceI	AGGCCT	2 cut(s)	123, 578
PciSI	GCTCTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	54, 213
PkrI	GCNGC	5 cut(s)	37, 73, 430, 447, 484
Psp6I	CCWGG	2 cut(s)	118, 525
PspGI	CCWGG	2 cut(s)	118, 525
PspN4I	GGNNCC	3 cut(s)	145, 498, 535
PstI	CTGCAG	1 cut(s)	450
PvuII	CAGCTG	1 cut(s)	445
SacII	CCGCGG	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	5 cut(s)	36, 72, 429, 446, 483
ScrFI	CCNGG	5 cut(s)	120, 180, 228, 413, 527
SduI	GDGCHC	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	446
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	234, 270, 293
SseBI	AGGCCT	2 cut(s)	123, 578
SsiI	CCGC	5 cut(s)	33, 36, 38, 231, 429
SspMI	CTAG	3 cut(s)	110, 566, 580
StuI	AGGCCT	2 cut(s)	123, 578
StyD4I	CCNGG	5 cut(s)	118, 178, 226, 411, 525
StyI	CCWWGG	2 cut(s)	147, 573
TaiI	ACGT	2 cut(s)	282, 524
TaqI	TCGA	2 cut(s)	168, 216
TasI	AATT	3 cut(s)	234, 270, 293
TauI	GCSGC	2 cut(s)	38, 431
TfiI	GAWTC	2 cut(s)	54, 213
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	3 cut(s)	71, 445, 482
Tsp45I	GTSAC	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	3 cut(s)	110, 566, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.