Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006043

Physical Location & Seq

Genomic Coordinates Forward (+)

7221517 .. 7241124

Gene Structure 19608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGGCGCCTATCCTGGCAGTGTTTGTGATGACTTTTGCTATGGTCTTTGGCAACTCTGCTGCTGATCCGGACTTGCTTCAAGATATTTGTGTTGCAGACTTCACTTCCGCGACGAAAGTCAATGGGTTCGCGTGCAAGGACGCAGCAAATGCAACAGCAGAGGACTTCTTCTTTGCCGGACTAGCAAAGCCAGGCCTCACCAACAACACCTTTGGCTCTTTGGTGACTGCAGCCAATGTGCAGAAGATCCCAGGCCTCAACACCCTAGGCGTGTCGTTGGCCCGTATTGATTATGCTCCCGGAGGCATCAACCCACCTCACACTCACCCACGCGCCACCGAGATAGTCTTCGTGCTCGAAGGTTCGTTGGATGTTGGGTTCATTACCACAGCAAACAAGCTCATTTCCAAGACCATTGCCAAGGGTGAAGTGTTTGTGTTCCCAAAGGGGTTAGTTCACTTCCAGAAGAACAATGGCAAGGTCCCTGCTTCCGTGATCGCCGGGTTCAACTCTCAGCTCCAGGGTACCGCCAATATTGCCCTCACATTGTTCGCCGCCTCGCCACCGGTGGAGGATGATGTGTTGACCAGTACTTTCCAGGTTGGTACTAAAGAGATTAAGAAGATCAAGGCAAAGTTTGCACCCAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

218

Amino Acids

22.79

Weight (kDa)

8.52

Isoelectric Point (pI)

24.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	61 - 207	3.4e-50	Cupin
Cupin_2	PF07883	97 - 167	3.3e-11	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09560
fragaria_vesca	FvH4_6g08730 FvH4_6g08740
malus_domestica	MD04G1184000.v1.1 MD12G1197400.v1.1
prunus_persica	Prupe.6G302700_v2.0.a1
pyrus_communis	pycom04g16300 pycom04g16320 pycom12g18370
rosa_chinensis	RchiOBHm_Chr3g0458991 RchiOBHm_Chr3g0459001
rosa_laevigata	RLG00000025127 RLG00000025128
rosa_multiflora	Rmu_sc0004343.1_g000023 Rmu_sc0004343.1_g000027
rosa_roxburghii	Rroxscaffold_6G00420610 Rroxscaffold_6G00420620
rosa_rugosa	Rorug03G0032500 Rorug03G0032500
rosa_samantha	Rh3AG090400 Rh3AG090500 Rh3BG093400 Rh3BG093500 Rh3CG093700 Rh3CG093800 Rh3DG094100
rosa_wichuraiana	Rw3G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	2 cut(s)	7, 527
AccII	CGCG	3 cut(s)	113, 134, 336
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	4 cut(s)	5, 111, 531, 558
AclWI	GGATC	2 cut(s)	62, 244
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	3 cut(s)	529, 595, 610
AgeI	ACCGGT	1 cut(s)	568
AgsI	TTSAA	2 cut(s)	83, 511
AjnI	CCWGG	5 cut(s)	15, 193, 253, 522, 600
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
AluBI	AGCT	2 cut(s)	403, 520
AluI	AGCT	2 cut(s)	403, 520
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	62, 244
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	4 cut(s)	196, 256, 282, 651
ApeKI	GCWGC	3 cut(s)	62, 146, 233
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AsiGI	ACCGGT	1 cut(s)	568
Asp718I	GGTACC	1 cut(s)	527
AspA2I	CCTAGG	1 cut(s)	268
AspLEI	GCGC	2 cut(s)	10, 338
AspS9I	GGNCC	2 cut(s)	283, 484
AsuC2I	CCSGG	2 cut(s)	303, 505
AsuHPI	GGTGA	4 cut(s)	193, 238, 320, 440
AvaII	GGWCC	1 cut(s)	484
AvrII	CCTAGG	1 cut(s)	268
BanI	GGYRCC	2 cut(s)	7, 527
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	49, 158, 245
BciT130I	CCWGG	5 cut(s)	17, 195, 255, 524, 602
BcnI	CCSGG	2 cut(s)	303, 505
BfaI	CTAG	3 cut(s)	185, 269, 655
BfmI	CTRYAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	5 cut(s)	6, 63, 147, 234, 558
BlnI	CCTAGG	1 cut(s)	268
BlsI	GCNGC	5 cut(s)	7, 64, 148, 235, 559
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	7 cut(s)	17, 195, 255, 303, 505, 524, 602
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	283, 484
BmiI	GGNNCC	3 cut(s)	9, 486, 529
BmrFI	CCNGG	7 cut(s)	17, 195, 255, 303, 505, 524, 602
BmsI	GCATC	1 cut(s)	318
BoxI	GACNNNNGTC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	506
BpuMI	CCSGG	2 cut(s)	303, 505
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	5 cut(s)	253, 268, 423, 523, 648
BsaWI	WCCGGW	2 cut(s)	70, 568
Bse118I	RCCGGY	1 cut(s)	568
Bse1I	ACTGG	1 cut(s)	591
Bse3DI	GCAATG	1 cut(s)	417
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	5 cut(s)	17, 195, 255, 524, 602
BseDI	CCNNGG	5 cut(s)	253, 268, 423, 523, 648
BseGI	GGATG	2 cut(s)	379, 583
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	1 cut(s)	591
BseXI	GCAGC	3 cut(s)	49, 158, 245
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	3 cut(s)	113, 134, 336
BshFI	GGCC	4 cut(s)	198, 258, 284, 653
BshNI	GGYRCC	2 cut(s)	7, 527
BshTI	ACCGGT	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	5 cut(s)	71, 180, 303, 504, 569
BslFI	GGGAC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	4 cut(s)	198, 258, 284, 653
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	67, 249, 498, 627
BspACI	CCGC	4 cut(s)	5, 111, 531, 558
BspANI	GGCC	4 cut(s)	198, 258, 284, 653
BspCNI	CTCAG	1 cut(s)	529
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	3 cut(s)	113, 134, 336
BspLI	GGNNCC	3 cut(s)	9, 486, 529
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	2 cut(s)	62, 244
BspT107I	GGYRCC	2 cut(s)	7, 527
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	591
BssAI	RCCGGY	1 cut(s)	568
BssECI	CCNNGG	5 cut(s)	253, 268, 423, 523, 648
BssMI	GATC	4 cut(s)	67, 249, 498, 627
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	3 cut(s)	268, 423, 648
Bst2UI	CCWGG	5 cut(s)	17, 195, 255, 524, 602
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	2 cut(s)	152, 641
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	379, 583
BstFNI	CGCG	3 cut(s)	113, 134, 336
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 338
BstKTI	GATC	4 cut(s)	70, 252, 501, 630
BstMBI	GATC	4 cut(s)	67, 249, 498, 627
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 185, 539, 641, 650
BstNI	CCWGG	5 cut(s)	17, 195, 255, 524, 602
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	7 cut(s)	15, 193, 253, 301, 503, 522, 600
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	3 cut(s)	113, 134, 336
BstV1I	GCAGC	3 cut(s)	49, 158, 245
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	4 cut(s)	198, 258, 284, 653
BtsCI	GGATG	2 cut(s)	379, 583
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	2 cut(s)	10, 338
Cfr10I	RCCGGY	1 cut(s)	568
Cfr13I	GGNCC	2 cut(s)	283, 484
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	528, 594, 609
CspAI	ACCGGT	1 cut(s)	568
CviJI	RGCY	9 cut(s)	193, 198, 219, 236, 258, 284, 403, 520, 653
CviKI_1	RGCY	9 cut(s)	193, 198, 219, 236, 258, 284, 403, 520, 653
CviQI	GTAC	3 cut(s)	528, 594, 609
DdeI	CTNAG	1 cut(s)	516
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	4 cut(s)	69, 251, 500, 629
DpnII	GATC	4 cut(s)	67, 249, 498, 627
Eco130I	CCWWGG	3 cut(s)	268, 423, 648
Eco147I	AGGCCT	3 cut(s)	198, 258, 653
Eco47I	GGWCC	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRII	CCWGG	5 cut(s)	15, 193, 253, 522, 600
EcoT14I	CCWWGG	3 cut(s)	268, 423, 648
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
ErhI	CCWWGG	3 cut(s)	268, 423, 648
FaiI	YATR	2 cut(s)	44, 297
FaqI	GGGAC	1 cut(s)	470
Fnu4HI	GCNGC	5 cut(s)	6, 63, 147, 234, 558
FokI	GGATG	2 cut(s)	386, 590
Fsp4HI	GCNGC	5 cut(s)	6, 63, 147, 234, 558
FspBI	CTAG	3 cut(s)	185, 269, 655
GlaI	GCGC	2 cut(s)	9, 337
GluI	GCNGC	5 cut(s)	6, 63, 147, 234, 558
GsuI	CTGGAG	1 cut(s)	506
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	198, 258, 284, 653
HapII	CCGG	5 cut(s)	71, 180, 303, 504, 569
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	10, 338
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	2 cut(s)	8, 336
HinP1I	GCGC	2 cut(s)	8, 336
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HpaII	CCGG	5 cut(s)	71, 180, 303, 504, 569
HphI	GGTGA	4 cut(s)	193, 238, 320, 440
Hpy166II	GTNNAC	2 cut(s)	460, 588
Hpy188III	TCNNGA	3 cut(s)	71, 83, 466
Hpy8I	GTNNAC	2 cut(s)	460, 588
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	356
HpyCH4V	TGCA	6 cut(s)	98, 138, 155, 233, 244, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 185, 539, 641, 650
HpyF3I	CTNAG	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	2 cut(s)	8, 336
KasI	GGCGCC	1 cut(s)	7
Kpn2I	TCCGGA	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	67, 249, 498, 627
LmnI	GCTCC	2 cut(s)	304, 525
Lsp1109I	GCAGC	3 cut(s)	49, 158, 245
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	3 cut(s)	185, 269, 655
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	69, 251, 500, 629
MboI	GATC	4 cut(s)	67, 249, 498, 627
MboII	GAAGA	5 cut(s)	163, 259, 343, 481, 637
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	360
Mly113I	GGCGCC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	8 cut(s)	157, 209, 269, 299, 330, 554, 568, 571
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	1 cut(s)	621
MspI	CCGG	5 cut(s)	71, 180, 303, 504, 569
MspR9I	CCNGG	7 cut(s)	17, 195, 255, 303, 505, 524, 602
MvaI	CCWGG	5 cut(s)	17, 195, 255, 524, 602
MvnI	CGCG	3 cut(s)	113, 134, 336
MwoI	GCNNNNNNNGC	5 cut(s)	152, 185, 539, 641, 650
NarI	GGCGCC	1 cut(s)	8
NciI	CCSGG	2 cut(s)	303, 505
NdeII	GATC	4 cut(s)	67, 249, 498, 627
NlaIV	GGNNCC	3 cut(s)	9, 486, 529
NmuCI	GTSAC	1 cut(s)	226
PceI	AGGCCT	3 cut(s)	198, 258, 653
PfoI	TCCNGGA	1 cut(s)	301
PinAI	ACCGGT	1 cut(s)	568
PkrI	GCNGC	5 cut(s)	7, 64, 148, 235, 559
PluTI	GGCGCC	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	484
PshAI	GACNNNNGTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	5 cut(s)	15, 193, 253, 522, 600
PspGI	CCWGG	5 cut(s)	15, 193, 253, 522, 600
PspN4I	GGNNCC	3 cut(s)	9, 486, 529
PspPI	GGNCC	2 cut(s)	283, 484
PspPPI	RGGWCCY	1 cut(s)	484
PstI	CTGCAG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	3 cut(s)	529, 595, 610
RsaNI	GTAC	3 cut(s)	528, 594, 609
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	5 cut(s)	6, 63, 147, 234, 558
Sau3AI	GATC	4 cut(s)	67, 249, 498, 627
Sau96I	GGNCC	2 cut(s)	283, 484
ScaI	AGTACT	1 cut(s)	595
ScrFI	CCNGG	7 cut(s)	17, 195, 255, 303, 505, 524, 602
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	7 cut(s)	215, 322, 367, 405, 486, 522, 606
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	1 cut(s)	231
SfoI	GGCGCC	1 cut(s)	9
SgrAI	CRCCGGYG	1 cut(s)	568
SinI	GGWCC	1 cut(s)	484
SseBI	AGGCCT	3 cut(s)	198, 258, 653
SsiI	CCGC	4 cut(s)	5, 111, 531, 558
SspDI	GGCGCC	1 cut(s)	7
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	3 cut(s)	185, 269, 655
StuI	AGGCCT	3 cut(s)	198, 258, 653
StyD4I	CCNGG	7 cut(s)	15, 193, 253, 301, 503, 522, 600
StyI	CCWWGG	3 cut(s)	268, 423, 648
TaqI	TCGA	1 cut(s)	360
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	2 cut(s)	8, 560
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	3 cut(s)	62, 146, 233
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	373
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XmaJI	CCTAGG	1 cut(s)	268
XspI	CTAG	3 cut(s)	185, 269, 655
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.