Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010262

Physical Location & Seq

Genomic Coordinates Forward (+)

3154390 .. 3156376

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGATGTTTCAGGAAGCTTGAATTGCGTTGTTGTGGCGGTAGATGGAAGCGAGGTGAGTATGGAAGCTCTGAGGTGGGCTCTAGACAACCTCAAGCTCTCTTCGTCTTCTTCCGATTCATCATTCGTCGTGCTCCACGTCCAGCCGTCGCCTTCTGTAGCCGCCGGCGTGAGTCCCGGCACCATACCTTTCGGTGGTCCCAGTGGTCTTGAGGTTCCTGCTTTCACTGCTGCAATCGAGCAACACCAGAAGCGGATCACCGACACCATCCTCGAACACGCTAGTCAAATTTGTGCTGAAAAATCTGTGAATGTGAAAACACAAGTGGTTATTGGGGATCCCAAGTATAAAATCTGCGAAGCTGTAGAGAATTTGCATGCTGATCTTCTTGTCATGGGCTCCCGGGCTTATGGCCGCATTAAGAGAATGTTTCTGGGAAGTGTAAGCAACTACTGCACCAACCACGCCCATTGTCCTGTTGTGATAATCAAACCAAAAGAGGATTCTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

171

Amino Acids

18.15

Weight (kDa)

6.04

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	10 - 164	1.7e-29	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09740 AT1G09740
fragaria_vesca	FvH4_5g35520 FvH4_5g35520
malus_domestica	MD15G1383800.v1.1
prunus_persica	Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1
pyrus_communis	pycom15g34340
rosa_chinensis	RchiOBHm_Chr7g0236901
rosa_laevigata	RLG00000001049
rosa_multiflora	Rmu_sc0010895.1_g000002 Rmu_sc0028822.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224700
rosa_rugosa	Rorug07G0300900 Rorug07G0300900 Rorug07G0300900
rosa_samantha	Rh7AG455700 Rh7CG474400 Rh7DG443600
rosa_wichuraiana	Rw7G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	4 cut(s)	38, 162, 253, 415
AclWI	GGATC	3 cut(s)	263, 332, 345
AcoI	YGGCCR	1 cut(s)	412
AcsI	RAATTY	2 cut(s)	288, 370
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	1 cut(s)	487
AluBI	AGCT	4 cut(s)	18, 68, 97, 362
AluI	AGCT	4 cut(s)	18, 68, 97, 362
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	263, 332, 345
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	288, 370
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	3 cut(s)	177, 403, 404
AsuHPI	GGTGA	2 cut(s)	67, 250
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	2 cut(s)	82, 401
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	38, 275
BceAI	ACGGC	1 cut(s)	130
BcnI	CCSGG	3 cut(s)	177, 403, 404
BfaI	CTAG	2 cut(s)	83, 282
BfmI	CTRYAG	2 cut(s)	156, 363
BisI	GCNGC	3 cut(s)	162, 231, 415
BlsI	GCNGC	3 cut(s)	163, 232, 416
Bme1390I	CCNGG	3 cut(s)	177, 403, 404
Bme18I	GGWCC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	402
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	5 cut(s)	181, 199, 216, 339, 400
BmrFI	CCNGG	3 cut(s)	177, 403, 404
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpuEI	CTTGAG	2 cut(s)	77, 230
BpuMI	CCSGG	3 cut(s)	177, 403, 404
BsaJI	CCNNGG	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	10, 267
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	217
BsgI	GTGCAG	1 cut(s)	439
BshFI	GGCC	1 cut(s)	414
BshNI	GGYRCC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	3 cut(s)	165, 177, 403
BslFI	GGGAC	2 cut(s)	159, 183
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmFI	GGGAC	2 cut(s)	159, 183
BsnI	GGCC	1 cut(s)	414
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	3 cut(s)	82, 135, 401
Bsp143I	GATC	3 cut(s)	255, 337, 382
BspACI	CCGC	4 cut(s)	38, 162, 253, 415
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	5 cut(s)	181, 199, 216, 339, 400
BspPI	GGATC	3 cut(s)	263, 332, 345
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	3 cut(s)	255, 337, 382
Bst6I	CTCTTC	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	453
BstC8I	GCNNGC	2 cut(s)	166, 378
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	10, 267
BstKTI	GATC	3 cut(s)	258, 340, 385
BstMBI	GATC	3 cut(s)	255, 337, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 227, 453
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	175, 401, 402
BstSFI	CTRYAG	2 cut(s)	156, 363
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	414
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	10, 267
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	208, 225
Cac8I	GCNNGC	2 cut(s)	166, 378
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	197
Cfr9I	CCCGGG	1 cut(s)	402
CspCI	CAANNNNNGTGG	2 cut(s)	452, 487
CviAII	CATG	2 cut(s)	377, 394
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	3 cut(s)	257, 339, 384
DpnII	GATC	3 cut(s)	255, 337, 382
EaeI	YGGCCR	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco24I	GRGCYC	2 cut(s)	82, 401
Eco47I	GGWCC	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	402
EcoT38I	GRGCYC	2 cut(s)	82, 401
FaeI	CATG	2 cut(s)	380, 397
FaiI	YATR	7 cut(s)	62, 185, 348, 378, 395, 411, 514
FaqI	GGGAC	2 cut(s)	159, 183
FatI	CATG	2 cut(s)	376, 393
Fnu4HI	GCNGC	3 cut(s)	162, 231, 415
FokI	GGATG	2 cut(s)	17, 254
FriOI	GRGCYC	2 cut(s)	82, 401
Fsp4HI	GCNGC	3 cut(s)	162, 231, 415
FspBI	CTAG	2 cut(s)	83, 282
GluI	GCNGC	3 cut(s)	162, 231, 415
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	3 cut(s)	165, 177, 403
Hin1II	CATG	2 cut(s)	380, 397
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	3 cut(s)	116, 172, 503
HpaII	CCGG	3 cut(s)	165, 177, 403
HphI	GGTGA	2 cut(s)	67, 250
Hpy188I	TCNGA	2 cut(s)	72, 115
Hpy188III	TCNNGA	3 cut(s)	12, 83, 209
Hpy99I	CGWCG	2 cut(s)	131, 151
HpyAV	CCTTC	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	233, 376, 456, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 227, 453
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	380, 397
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	255, 337, 382
LmnI	GCTCC	2 cut(s)	138, 404
LpnPI	CCDG	9 cut(s)	155, 178, 190, 214, 231, 260, 416, 419, 489
Lsp1109I	GCAGC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	83, 282
MaeII	ACGT	1 cut(s)	138
MalI	GATC	3 cut(s)	257, 339, 384
MboI	GATC	3 cut(s)	255, 337, 382
MboII	GAAGA	5 cut(s)	93, 99, 102, 377, 498
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	3 cut(s)	82, 135, 401
MluCI	AATT	3 cut(s)	22, 288, 370
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	6 cut(s)	46, 66, 101, 205, 281, 493
MreI	CGCCGGCG	1 cut(s)	164
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	1 cut(s)	420
MspI	CCGG	3 cut(s)	165, 177, 403
MspR9I	CCNGG	3 cut(s)	177, 403, 404
MwoI	GCNNNNNNNGC	3 cut(s)	24, 227, 453
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	3 cut(s)	177, 403, 404
NdeII	GATC	3 cut(s)	255, 337, 382
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	380, 397
NlaIV	GGNNCC	5 cut(s)	181, 199, 216, 339, 400
NspI	RCATGY	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	116, 503
PkrI	GCNGC	3 cut(s)	163, 232, 416
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PspN4I	GGNNCC	5 cut(s)	181, 199, 216, 339, 400
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	3 cut(s)	162, 231, 415
Sau3AI	GATC	3 cut(s)	255, 337, 382
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	3 cut(s)	177, 403, 404
SduI	GDGCHC	3 cut(s)	82, 135, 401
SfcI	CTRYAG	2 cut(s)	156, 363
SgrAI	CRCCGGYG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	197
SmaI	CCCGGG	1 cut(s)	404
SmlI	CTYRAG	2 cut(s)	92, 209
SmoI	CTYRAG	2 cut(s)	92, 209
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	3 cut(s)	22, 288, 370
SsiI	CCGC	4 cut(s)	38, 162, 253, 415
SspMI	CTAG	2 cut(s)	83, 282
StyD4I	CCNGG	3 cut(s)	175, 401, 402
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	237, 273
TasI	AATT	3 cut(s)	22, 288, 370
TauI	GCSGC	2 cut(s)	164, 417
TfiI	GAWTC	2 cut(s)	116, 503
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	2 cut(s)	208, 232
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	108
TspMI	CCCGGG	1 cut(s)	402
TspRI	CASTG	2 cut(s)	208, 232
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	288, 370
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	1 cut(s)	380
XmaI	CCCGGG	1 cut(s)	402
XspI	CTAG	2 cut(s)	83, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.