Rw7G037830

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0010262
Physical Location & Seq
Forward (+)
57364173 .. 57365422
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037830.1

Sequence Viewer

Length: 522 bp
ATGTCCTGCAACCTCGGCTGCGTGATCGTCGCCGTTGACGGCAGTGAGGAGAGCATGAGCGCCTTGACCTGGGCGCTCGACAACCTCAAGCTCCGATCCTCCTCTACTCCCGACTCCACCTGCGCCGGCCACTTCGTCGTCCTCCACGTCCAATCTCCGCCGTCAATCGCCGCTGGCCTCACTCCCGCCGCCATCCCCTTCGGTGGCCCCAGCGATTTGGAGGTGCCGGCGTTCACGGCGGCGATCGAGGCCCACCTGAAGCGAATCACGGAGGCTATTCTAGCACACGCTTTGAGGATTTGCTCCGAAAAGAAGGTGAATGTGAAAACCCAAGTGGTAGTTGGGGATCCAAAGGAGAAGATTTGTGAAGCTGTTGAGAATTTGCATGCTGACTTACTTGTCATGGGCTCCAGAGCTATTGGCCCTCTTAAAAGGATGTTTCTTGGAAGTGTGAGCAACTATTGCGCTAACTATGCACAATGCCCCGTGATCATTTCCAAGGCAAAGGACGCTGTGTCATAA

Protein Analysis

173

Amino Acids

18.18

Weight (kDa)

6.5

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 8 - 166 1.2e-27 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 128
AasI GACNNNNNNGTC 1 cut(s) 398
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 223
AciI CCGC 5 cut(s) 158, 171, 186, 189, 239
AclWI GGATC 3 cut(s) 90, 341, 354
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 69, 203
AhdI GACNNNNNGTC 1 cut(s) 514
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 3 cut(s) 91, 371, 416
AluI AGCT 3 cut(s) 91, 371, 416
AlwI GGATC 3 cut(s) 90, 341, 354
AoxI GGCC 5 cut(s) 127, 175, 205, 249, 421
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 379
AspLEI GCGC 4 cut(s) 62, 76, 125, 467
AspS9I GGNCC 3 cut(s) 206, 250, 422
AsuHPI GGTGA 1 cut(s) 328
BamHI GGATCC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 5
BccI CCATC 1 cut(s) 200
BceAI ACGGC 4 cut(s) 17, 55, 145, 252
BciT130I CCWGG 1 cut(s) 70
BclI TGATCA 1 cut(s) 489
BfaI CTAG 1 cut(s) 281
BfoI RGCGCY 2 cut(s) 63, 77
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 4 cut(s) 19, 171, 189, 240
BlsI GCNGC 4 cut(s) 20, 172, 190, 241
Bme1390I CCNGG 1 cut(s) 70
BmeRI GACNNNNNGTC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 206, 250, 422
BmiI GGNNCC 4 cut(s) 208, 225, 348, 409
BmrFI CCNGG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 71
BsaJI CCNNGG 3 cut(s) 13, 69, 498
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 203
Bse118I RCCGGY 2 cut(s) 125, 226
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 3 cut(s) 13, 69, 498
BseGI GGATG 2 cut(s) 192, 441
BseLI CCNNNNNNNGG 2 cut(s) 69, 203
BseRI GAGGAG 2 cut(s) 62, 91
BseXI GCAGC 1 cut(s) 5
BseYI CCCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 5 cut(s) 129, 177, 207, 251, 423
BshNI GGYRCC 1 cut(s) 223
BsiEI CGRYCG 1 cut(s) 246
BsiSI CCGG 2 cut(s) 126, 227
BslI CCNNNNNNNGG 2 cut(s) 69, 203
BsnI GGCC 5 cut(s) 129, 177, 207, 251, 423
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 5 cut(s) 24, 95, 243, 346, 489
BspACI CCGC 5 cut(s) 158, 171, 186, 189, 239
BspANI GGCC 5 cut(s) 129, 177, 207, 251, 423
BspLI GGNNCC 4 cut(s) 208, 225, 348, 409
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 3 cut(s) 90, 341, 354
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 2 cut(s) 125, 226
BssAI RCCGGY 2 cut(s) 125, 226
BssECI CCNNGG 3 cut(s) 13, 69, 498
BssMI GATC 5 cut(s) 24, 95, 243, 346, 489
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 462
BstC8I GCNNGC 4 cut(s) 127, 175, 228, 387
BstF5I GGATG 2 cut(s) 192, 441
BstH2I RGCGCY 2 cut(s) 63, 77
BstHHI GCGC 4 cut(s) 62, 76, 125, 467
BstKTI GATC 5 cut(s) 27, 98, 246, 349, 492
BstMBI GATC 5 cut(s) 24, 95, 243, 346, 489
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 7 cut(s) 15, 236, 248, 281, 462, 473, 509
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 5 cut(s) 129, 177, 207, 251, 423
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 192, 441
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 4 cut(s) 127, 175, 228, 387
CfoI GCGC 4 cut(s) 62, 76, 125, 467
Cfr10I RCCGGY 2 cut(s) 125, 226
Cfr13I GGNCC 3 cut(s) 206, 250, 422
CviAII CATG 3 cut(s) 55, 386, 403
DpnI GATC 5 cut(s) 26, 97, 245, 348, 491
DpnII GATC 5 cut(s) 24, 95, 243, 346, 489
DrdI GACNNNNNNGTC 1 cut(s) 398
DriI GACNNNNNGTC 1 cut(s) 514
DseDI GACNNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 127
Eam1105I GACNNNNNGTC 1 cut(s) 514
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 3 cut(s) 58, 389, 406
FaiI YATR 5 cut(s) 56, 387, 404, 474, 520
FatI CATG 3 cut(s) 54, 385, 402
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 4 cut(s) 19, 171, 189, 240
FokI GGATG 2 cut(s) 179, 448
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 4 cut(s) 19, 171, 189, 240
FspBI CTAG 1 cut(s) 281
GlaI GCGC 4 cut(s) 61, 75, 124, 466
GluI GCNGC 4 cut(s) 19, 171, 189, 240
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 394
HaeII RGCGCY 2 cut(s) 63, 77
HaeIII GGCC 5 cut(s) 129, 177, 207, 251, 423
HapII CCGG 2 cut(s) 126, 227
HhaI GCGC 4 cut(s) 62, 76, 125, 467
Hin1II CATG 3 cut(s) 58, 389, 406
Hin6I GCGC 4 cut(s) 60, 74, 123, 465
HinP1I GCGC 4 cut(s) 60, 74, 123, 465
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 2 cut(s) 113, 264
HpaII CCGG 2 cut(s) 126, 227
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 2 cut(s) 37, 234
Hpy188I TCNGA 2 cut(s) 95, 307
Hpy188III TCNNGA 2 cut(s) 110, 411
Hpy8I GTNNAC 2 cut(s) 37, 234
Hpy99I CGWCG 2 cut(s) 32, 140
HpyAV CCTTC 2 cut(s) 208, 307
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 9, 385, 476
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 236, 248, 281, 462, 473, 509
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 58, 389, 406
HspAI GCGC 4 cut(s) 60, 74, 123, 465
KroI GCCGGC 2 cut(s) 125, 226
KroNI GCCGGC 2 cut(s) 127, 228
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 5 cut(s) 24, 95, 243, 346, 489
LmnI GCTCC 3 cut(s) 96, 308, 413
Lsp1109I GCAGC 1 cut(s) 5
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 147
MalI GATC 5 cut(s) 26, 97, 245, 348, 491
MboI GATC 5 cut(s) 24, 95, 243, 346, 489
MboII GAAGA 1 cut(s) 370
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 1 cut(s) 379
MlyI GAGTC 1 cut(s) 107
MroNI GCCGGC 2 cut(s) 125, 226
MseI TTAA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 126, 227
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 7 cut(s) 15, 236, 248, 281, 462, 473, 509
NaeI GCCGGC 2 cut(s) 127, 228
NdeII GATC 5 cut(s) 24, 95, 243, 346, 489
NgoMIV GCCGGC 2 cut(s) 125, 226
NlaIII CATG 3 cut(s) 58, 389, 406
NlaIV GGNNCC 4 cut(s) 208, 225, 348, 409
NspI RCATGY 1 cut(s) 389
PaeI GCATGC 1 cut(s) 389
PaqCI CACCTGC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdiI GCCGGC 2 cut(s) 127, 228
PfeI GAWTC 1 cut(s) 264
PkrI GCNGC 4 cut(s) 20, 172, 190, 241
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 4 cut(s) 208, 225, 348, 409
PspPI GGNCC 3 cut(s) 206, 250, 422
PsuI RGATCY 1 cut(s) 346
PvuI CGATCG 1 cut(s) 246
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 4 cut(s) 19, 171, 189, 240
Sau3AI GATC 5 cut(s) 24, 95, 243, 346, 489
Sau96I GGNCC 3 cut(s) 206, 250, 422
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SphI GCATGC 1 cut(s) 389
Sse9I AATT 1 cut(s) 379
SsiI CCGC 5 cut(s) 158, 171, 186, 189, 239
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 498
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 78, 246
TasI AATT 1 cut(s) 379
TauI GCSGC 3 cut(s) 173, 191, 242
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 49
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.