RLG00000001049

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010262
Physical Location & Seq
Reverse (-)
9794466 .. 9795482
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001049

Sequence Viewer

Length: 522 bp
ATGTCCGGCAACCTCGGCTGCGTGATCGTCGCCGTTGACGGCAGTGAGGAGAGCATGAGCGCCTTGACCTGGGCGCTCGACAACCTCAAGCTCCGATCCTCCTCTACTCCCGACTCCACCTCCGCCAGCCACTTCGTCGTCCTCCACGTCCAATCTCCGCCGTCAATCGCCGCTGGCCTCACTCCCGCCGCCATCCCCTTCGGTGGCCCCAGCGATTTGGAGGTGCCGGCGTTCACGGCGGCGATCGAGGCCCACCTGAAGCGAATCACGGAGGCCATTTTGGCACACGCTTTGAGGATTTGTTCCGAAAAGAAGGTGAATGTGAAAACCCAAGTGGTAGTTGGGGATCCGAAGGAGAAGATTTGTGAAGCTGTTGAGAATTTGCATGCTGACTTACTTGTCATGGGCTCCAGAGCTATTGGCCCTCTTAAAAGGATGTTTCTTGGAAGTGTGAGCAACTATTGTGCTAACCATGCACAATGCCCCGTGATCATTTCCAAGGCAAAGGGCGCCGCGTCATAA

Protein Analysis

174

Amino Acids

18.04

Weight (kDa)

7.0

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 8 - 166 5.4e-29 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AccB1I GGYRCC 2 cut(s) 223, 509
AccII CGCG 1 cut(s) 515
AciI CCGC 7 cut(s) 123, 158, 171, 186, 189, 239, 513
AclWI GGATC 3 cut(s) 90, 341, 354
AcsI RAATTY 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 510
AfiI CCNNNNNNNGG 2 cut(s) 69, 203
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 3 cut(s) 91, 371, 416
AluI AGCT 3 cut(s) 91, 371, 416
AlwI GGATC 3 cut(s) 90, 341, 354
AoxI GGCC 5 cut(s) 175, 205, 249, 273, 421
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 379
AspLEI GCGC 3 cut(s) 62, 76, 512
AspS9I GGNCC 3 cut(s) 206, 250, 422
AsuHPI GGTGA 1 cut(s) 328
BamHI GGATCC 1 cut(s) 346
BanI GGYRCC 2 cut(s) 223, 509
BanII GRGCYC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 5
BccI CCATC 1 cut(s) 200
BceAI ACGGC 4 cut(s) 17, 55, 145, 252
BciT130I CCWGG 1 cut(s) 70
BclI TGATCA 1 cut(s) 489
BfoI RGCGCY 3 cut(s) 63, 77, 513
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 5 cut(s) 19, 171, 189, 240, 513
BlsI GCNGC 5 cut(s) 20, 172, 190, 241, 514
Bme1390I CCNGG 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 206, 250, 422
BmiI GGNNCC 5 cut(s) 208, 225, 348, 409, 511
BmrFI CCNGG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 13, 69, 498
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 203
Bse118I RCCGGY 1 cut(s) 226
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 3 cut(s) 13, 69, 498
BseGI GGATG 2 cut(s) 192, 441
BseLI CCNNNNNNNGG 2 cut(s) 69, 203
BseRI GAGGAG 2 cut(s) 62, 91
BseXI GCAGC 1 cut(s) 5
BseYI CCCAGC 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 515
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 5 cut(s) 177, 207, 251, 275, 423
BshNI GGYRCC 2 cut(s) 223, 509
BsiEI CGRYCG 1 cut(s) 246
BsiSI CCGG 2 cut(s) 6, 227
BslI CCNNNNNNNGG 2 cut(s) 69, 203
BsnI GGCC 5 cut(s) 177, 207, 251, 275, 423
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 5 cut(s) 24, 95, 243, 346, 489
BspACI CCGC 7 cut(s) 123, 158, 171, 186, 189, 239, 513
BspANI GGCC 5 cut(s) 177, 207, 251, 275, 423
BspFNI CGCG 1 cut(s) 515
BspLI GGNNCC 5 cut(s) 208, 225, 348, 409, 511
BspPI GGATC 3 cut(s) 90, 341, 354
BspT107I GGYRCC 2 cut(s) 223, 509
BsrFI RCCGGY 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 13, 69, 498
BssMI GATC 5 cut(s) 24, 95, 243, 346, 489
BssNI GRCGYC 1 cut(s) 510
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 510
BstC8I GCNNGC 4 cut(s) 127, 175, 228, 387
BstF5I GGATG 2 cut(s) 192, 441
BstFNI CGCG 1 cut(s) 515
BstH2I RGCGCY 3 cut(s) 63, 77, 513
BstHHI GCGC 3 cut(s) 62, 76, 512
BstKTI GATC 5 cut(s) 27, 98, 246, 349, 492
BstMBI GATC 5 cut(s) 24, 95, 243, 346, 489
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 6 cut(s) 15, 236, 248, 281, 473, 509
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 68
BstUI CGCG 1 cut(s) 515
BstV1I GCAGC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 5 cut(s) 177, 207, 251, 275, 423
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 192, 441
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 4 cut(s) 127, 175, 228, 387
CfoI GCGC 3 cut(s) 62, 76, 512
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 206, 250, 422
CseI GACGC 1 cut(s) 504
CviAII CATG 4 cut(s) 55, 386, 403, 473
DinI GGCGCC 1 cut(s) 511
DpnI GATC 5 cut(s) 26, 97, 245, 348, 491
DpnII GATC 5 cut(s) 24, 95, 243, 346, 489
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
EciI GGCGGA 2 cut(s) 112, 147
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 410
EgeI GGCGCC 1 cut(s) 511
EheI GGCGCC 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 4 cut(s) 58, 389, 406, 476
FaiI YATR 5 cut(s) 56, 387, 404, 474, 520
FatI CATG 4 cut(s) 54, 385, 402, 472
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 5 cut(s) 19, 171, 189, 240, 513
FokI GGATG 2 cut(s) 179, 448
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 5 cut(s) 19, 171, 189, 240, 513
GlaI GCGC 3 cut(s) 61, 75, 511
GluI GCNGC 5 cut(s) 19, 171, 189, 240, 513
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 394
HaeII RGCGCY 3 cut(s) 63, 77, 513
HaeIII GGCC 5 cut(s) 177, 207, 251, 275, 423
HapII CCGG 2 cut(s) 6, 227
HgaI GACGC 1 cut(s) 504
HhaI GCGC 3 cut(s) 62, 76, 512
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 4 cut(s) 58, 389, 406, 476
Hin6I GCGC 3 cut(s) 60, 74, 510
HinP1I GCGC 3 cut(s) 60, 74, 510
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 2 cut(s) 113, 264
HpaII CCGG 2 cut(s) 6, 227
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 2 cut(s) 37, 234
Hpy188I TCNGA 3 cut(s) 95, 307, 351
Hpy188III TCNNGA 2 cut(s) 110, 411
Hpy8I GTNNAC 2 cut(s) 37, 234
Hpy99I CGWCG 2 cut(s) 32, 140
HpyAV CCTTC 3 cut(s) 208, 307, 346
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 385, 476
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 236, 248, 281, 473, 509
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 4 cut(s) 58, 389, 406, 476
HspAI GCGC 3 cut(s) 60, 74, 510
KasI GGCGCC 1 cut(s) 509
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 5 cut(s) 24, 95, 243, 346, 489
LmnI GCTCC 2 cut(s) 96, 413
LpnPI CCDG 9 cut(s) 19, 55, 82, 139, 159, 223, 240, 269, 424
Lsp1109I GCAGC 1 cut(s) 5
MaeII ACGT 1 cut(s) 147
MalI GATC 5 cut(s) 26, 97, 245, 348, 491
MboI GATC 5 cut(s) 24, 95, 243, 346, 489
MboII GAAGA 1 cut(s) 370
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 1 cut(s) 379
Mly113I GGCGCC 1 cut(s) 510
MlyI GAGTC 1 cut(s) 107
MroNI GCCGGC 1 cut(s) 226
MseI TTAA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 6, 227
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 1 cut(s) 515
MwoI GCNNNNNNNGC 6 cut(s) 15, 236, 248, 281, 473, 509
NaeI GCCGGC 1 cut(s) 228
NarI GGCGCC 1 cut(s) 510
NdeII GATC 5 cut(s) 24, 95, 243, 346, 489
NgoMIV GCCGGC 1 cut(s) 226
NlaIII CATG 4 cut(s) 58, 389, 406, 476
NlaIV GGNNCC 5 cut(s) 208, 225, 348, 409, 511
NspI RCATGY 1 cut(s) 389
PaeI GCATGC 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 264
PkrI GCNGC 5 cut(s) 20, 172, 190, 241, 514
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 1 cut(s) 107
PluTI GGCGCC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 5 cut(s) 208, 225, 348, 409, 511
PspPI GGNCC 3 cut(s) 206, 250, 422
PsuI RGATCY 1 cut(s) 346
PvuI CGATCG 1 cut(s) 246
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 5 cut(s) 19, 171, 189, 240, 513
Sau3AI GATC 5 cut(s) 24, 95, 243, 346, 489
Sau96I GGNCC 3 cut(s) 206, 250, 422
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 410
SfoI GGCGCC 1 cut(s) 511
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SphI GCATGC 1 cut(s) 389
Sse9I AATT 1 cut(s) 379
SsiI CCGC 7 cut(s) 123, 158, 171, 186, 189, 239, 513
SspDI GGCGCC 1 cut(s) 509
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 498
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 78, 246
TasI AATT 1 cut(s) 379
TauI GCSGC 4 cut(s) 173, 191, 242, 515
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 49
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.