Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010262

Physical Location & Seq

Genomic Coordinates Forward (+)

62975294 .. 62976524

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG443600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCCGGCAACCTCGGCTGCGTGATCGTCGCCGTTGACGGCAGTGAGGAGAGCATGAGCGCCTTGACCTGGGCTCTCGACAACCTCAAGCTCCTCTCCTCCTCTCCTCCCGACTCCACCTCCGCCGGCCACTTCGTCGTCCTCCACGTCCAATCTCCGCCGTCAATCGCCGTTGGCCTCACTCCCGCCGCCATCCCCTTCGGTGGCCCCAGCGATTTGGAGGTGCCGGCGTTCACTGCGGCGATCGAGGCCCACCTGAAGCGGATCACGGAGGCCATTCTAGCACACGCTTTGAGGATTTGCTCCGAAAAGAAGGTGGATGTGAAAACCCAAGTGGTAGTTGGGGATCCGAAGGAGAAGATTTGTGAAGCTGTTGAGAATTTGCATGCTGACTTACTTGTCATGGGCTCCAGAGCTATGGGCCCTCTTAAAAGGATGTTTCTTGGAAGTGTGAGCAACTATTGCGCTAACTATGCACAATGCCCCGTGATCATTTCCAAGGCAAAGGGCGCTGCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

173

Amino Acids

18.04

Weight (kDa)

6.18

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	8 - 166	5.4e-28	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09740 AT1G09740
fragaria_vesca	FvH4_5g35520 FvH4_5g35520
malus_domestica	MD15G1383800.v1.1
prunus_persica	Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1
pyrus_communis	pycom15g34340
rosa_chinensis	RchiOBHm_Chr7g0236901
rosa_laevigata	RLG00000001049
rosa_multiflora	Rmu_sc0010895.1_g000002 Rmu_sc0028822.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224700
rosa_rugosa	Rorug07G0300900 Rorug07G0300900 Rorug07G0300900
rosa_samantha	Rh7AG455700 Rh7CG474400 Rh7DG443600
rosa_wichuraiana	Rw7G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	6 cut(s)	123, 158, 186, 189, 239, 262
AclWI	GGATC	3 cut(s)	272, 341, 354
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	69, 203
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	91, 371, 416
AluI	AGCT	3 cut(s)	91, 371, 416
AlwI	GGATC	3 cut(s)	272, 341, 354
AoxI	GGCC	6 cut(s)	127, 175, 205, 249, 273, 421
ApaI	GGGCCC	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	18, 512
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	3 cut(s)	62, 467, 512
AspS9I	GGNCC	4 cut(s)	206, 250, 421, 422
BaeGI	GKGCMC	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	3 cut(s)	76, 410, 425
BbvI	GCAGC	2 cut(s)	5, 499
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	4 cut(s)	17, 55, 145, 155
BciT130I	CCWGG	1 cut(s)	70
BclI	TGATCA	1 cut(s)	489
BfaI	CTAG	1 cut(s)	281
BfoI	RGCGCY	2 cut(s)	63, 513
BisI	GCNGC	4 cut(s)	19, 189, 240, 513
BlsI	GCNGC	4 cut(s)	20, 190, 241, 514
Bme1390I	CCNGG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	4 cut(s)	206, 250, 421, 422
BmiI	GGNNCC	5 cut(s)	208, 225, 348, 409, 423
BmrFI	CCNGG	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	13, 69, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 203
Bse118I	RCCGGY	2 cut(s)	125, 226
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	3 cut(s)	13, 69, 498
BseGI	GGATG	3 cut(s)	192, 325, 441
BseLI	CCNNNNNNNGG	2 cut(s)	69, 203
BseRI	GAGGAG	5 cut(s)	62, 83, 88, 91, 96
BseSI	GKGCMC	1 cut(s)	425
BseXI	GCAGC	2 cut(s)	5, 499
BseYI	CCCAGC	1 cut(s)	209
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	6 cut(s)	129, 177, 207, 251, 275, 423
BshNI	GGYRCC	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	6, 126, 227
BslI	CCNNNNNNNGG	2 cut(s)	69, 203
BsnI	GGCC	6 cut(s)	129, 177, 207, 251, 275, 423
Bsp120I	GGGCCC	1 cut(s)	421
Bsp1286I	GDGCHC	3 cut(s)	76, 410, 425
Bsp143I	GATC	5 cut(s)	24, 243, 264, 346, 489
BspACI	CCGC	6 cut(s)	123, 158, 186, 189, 239, 262
BspANI	GGCC	6 cut(s)	129, 177, 207, 251, 275, 423
BspLI	GGNNCC	5 cut(s)	208, 225, 348, 409, 423
BspPI	GGATC	3 cut(s)	272, 341, 354
BspT107I	GGYRCC	1 cut(s)	223
BsrFI	RCCGGY	2 cut(s)	125, 226
BssAI	RCCGGY	2 cut(s)	125, 226
BssECI	CCNNGG	3 cut(s)	13, 69, 498
BssMI	GATC	5 cut(s)	24, 243, 264, 346, 489
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	462
BstC8I	GCNNGC	3 cut(s)	127, 228, 387
BstF5I	GGATG	3 cut(s)	192, 325, 441
BstH2I	RGCGCY	2 cut(s)	63, 513
BstHHI	GCGC	3 cut(s)	62, 467, 512
BstKTI	GATC	5 cut(s)	27, 246, 267, 349, 492
BstMBI	GATC	5 cut(s)	24, 243, 264, 346, 489
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 236, 248, 281, 462, 473, 509
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	425
BstV1I	GCAGC	2 cut(s)	5, 499
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	2 cut(s)	217, 418
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	6 cut(s)	129, 177, 207, 251, 275, 423
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	3 cut(s)	192, 325, 441
BtsI	GCAGTG	2 cut(s)	49, 234
BtsIMutI	CAGTG	2 cut(s)	49, 234
Cac8I	GCNNGC	3 cut(s)	127, 228, 387
CfoI	GCGC	3 cut(s)	62, 467, 512
Cfr10I	RCCGGY	2 cut(s)	125, 226
Cfr13I	GGNCC	4 cut(s)	206, 250, 421, 422
CseI	GACGC	1 cut(s)	504
CviAII	CATG	3 cut(s)	55, 386, 403
DpnI	GATC	5 cut(s)	26, 245, 266, 348, 491
DpnII	GATC	5 cut(s)	24, 243, 264, 346, 489
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	127
EciI	GGCGGA	2 cut(s)	112, 147
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	3 cut(s)	76, 410, 425
Eco57I	CTGAAG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	3 cut(s)	76, 410, 425
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	3 cut(s)	58, 389, 406
FaiI	YATR	6 cut(s)	56, 387, 404, 419, 474, 520
FatI	CATG	3 cut(s)	54, 385, 402
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	4 cut(s)	19, 189, 240, 513
FokI	GGATG	3 cut(s)	179, 332, 448
FriOI	GRGCYC	3 cut(s)	76, 410, 425
Fsp4HI	GCNGC	4 cut(s)	19, 189, 240, 513
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	3 cut(s)	61, 466, 511
GluI	GCNGC	4 cut(s)	19, 189, 240, 513
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	394
HaeII	RGCGCY	2 cut(s)	63, 513
HaeIII	GGCC	6 cut(s)	129, 177, 207, 251, 275, 423
HapII	CCGG	3 cut(s)	6, 126, 227
HgaI	GACGC	1 cut(s)	504
HhaI	GCGC	3 cut(s)	62, 467, 512
Hin1II	CATG	3 cut(s)	58, 389, 406
Hin6I	GCGC	3 cut(s)	60, 465, 510
HinP1I	GCGC	3 cut(s)	60, 465, 510
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	3 cut(s)	6, 126, 227
Hpy166II	GTNNAC	2 cut(s)	37, 234
Hpy188I	TCNGA	2 cut(s)	307, 351
Hpy188III	TCNNGA	3 cut(s)	77, 110, 411
Hpy8I	GTNNAC	2 cut(s)	37, 234
Hpy99I	CGWCG	2 cut(s)	32, 140
HpyAV	CCTTC	3 cut(s)	208, 307, 346
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	385, 476
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 236, 248, 281, 462, 473, 509
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	58, 389, 406
HspAI	GCGC	3 cut(s)	60, 465, 510
KroI	GCCGGC	2 cut(s)	125, 226
KroNI	GCCGGC	2 cut(s)	127, 228
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	5 cut(s)	24, 243, 264, 346, 489
LmnI	GCTCC	3 cut(s)	96, 308, 413
LpnPI	CCDG	8 cut(s)	19, 55, 82, 139, 223, 240, 269, 424
Lsp1109I	GCAGC	2 cut(s)	5, 499
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	147
MalI	GATC	5 cut(s)	26, 245, 266, 348, 491
MboI	GATC	5 cut(s)	24, 243, 264, 346, 489
MboII	GAAGA	1 cut(s)	370
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	3 cut(s)	76, 410, 425
MluCI	AATT	1 cut(s)	379
MlyI	GAGTC	1 cut(s)	107
MroNI	GCCGGC	2 cut(s)	125, 226
MseI	TTAA	1 cut(s)	429
MspI	CCGG	3 cut(s)	6, 126, 227
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	7 cut(s)	15, 236, 248, 281, 462, 473, 509
NaeI	GCCGGC	2 cut(s)	127, 228
NdeII	GATC	5 cut(s)	24, 243, 264, 346, 489
NgoMIV	GCCGGC	2 cut(s)	125, 226
NlaIII	CATG	3 cut(s)	58, 389, 406
NlaIV	GGNNCC	5 cut(s)	208, 225, 348, 409, 423
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdiI	GCCGGC	2 cut(s)	127, 228
PkrI	GCNGC	4 cut(s)	20, 190, 241, 514
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	5 cut(s)	208, 225, 348, 409, 423
PspOMI	GGGCCC	1 cut(s)	421
PspPI	GGNCC	4 cut(s)	206, 250, 421, 422
PsuI	RGATCY	1 cut(s)	346
PvuI	CGATCG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	4 cut(s)	19, 189, 240, 513
Sau3AI	GATC	5 cut(s)	24, 243, 264, 346, 489
Sau96I	GGNCC	4 cut(s)	206, 250, 421, 422
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	3 cut(s)	76, 410, 425
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	6 cut(s)	123, 158, 186, 189, 239, 262
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	498
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	78, 246
TasI	AATT	1 cut(s)	379
TauI	GCSGC	2 cut(s)	191, 242
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	2 cut(s)	49, 241
TseI	GCWGC	2 cut(s)	18, 512
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	49, 241
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.