FvH4_5g35520

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010262
Physical Location & Seq
Forward (+)
26025976 .. 26031178
5203 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35520.t1

Sequence Viewer

Length: 525 bp
ATGTCCGGCAACCTCGGCTGCGTGATCGTCGCCGTCGACGGCAATGAGGAGAGCATGAACGCCTTGACCTGGGCTCTCGACAACCTCAAGCTCCGATCCTCTTCTACTCCAGACGACTCCACCTCCGCCGGCCACTTCGTCATCCTCCACGTCCAGTCTCCGCCGTCAATCTCCGCCGGCCTCACTCCCGCCGTGGTCCCCTTCGGTGGGCCCAGCGATTTGGAGGTGCCGGCGTTCACGGCGGCTATCGAGGCCCACCTGAAGCGTATCACGGAGGCTATTCTTGCACACGCTTTGGCGATTTGCTCCGAAAAGAAGGTGAATGTGAAAACCCACGTGGTTGTTGGGGATCCGAAAGAGAAGATTTGTGAAGCTGTTGAGAATTTGCATGCTGATTTACTTGTCATGGGCTCCAGAGCTTTTGGCCCTCTTAAAAGGATGTTTCTCGGAAGTGTGAGCAACTATTGTGCTAATCATGCACAATGCCCAGTGATCATTTCCAAGACAAAGGGCGCAGCCTCATAA

Protein Analysis

175

Amino Acids

18.21

Weight (kDa)

6.36

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 8 - 167 1.2e-28 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 36
AciI CCGC 5 cut(s) 126, 161, 174, 189, 242
AclWI GGATC 3 cut(s) 90, 344, 357
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 1 cut(s) 281
AcvI CACGTG 1 cut(s) 337
AfiI CCNNNNNNNGG 3 cut(s) 69, 206, 207
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 3 cut(s) 91, 374, 419
AluI AGCT 3 cut(s) 91, 374, 419
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 3 cut(s) 90, 344, 357
AoxI GGCC 5 cut(s) 130, 178, 209, 252, 424
ApaI GGGCCC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 18, 515
ApoI RAATTY 1 cut(s) 382
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 5 cut(s) 196, 209, 210, 253, 425
AsuHPI GGTGA 1 cut(s) 331
AvaII GGWCC 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 213
BamHI GGATCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 3 cut(s) 76, 213, 413
BbrPI CACGTG 1 cut(s) 337
BbvI GCAGC 1 cut(s) 5
BceAI ACGGC 5 cut(s) 17, 55, 148, 176, 255
BciT130I CCWGG 1 cut(s) 70
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 162
BisI GCNGC 3 cut(s) 19, 243, 516
BlsI GCNGC 3 cut(s) 20, 244, 517
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 196
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 5 cut(s) 196, 209, 210, 253, 425
BmiI GGNNCC 5 cut(s) 198, 211, 228, 351, 412
BmrFI CCNGG 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 482
BmuI ACTGGG 1 cut(s) 482
BpmI CTGGAG 2 cut(s) 93, 397
BpuEI CTTGAG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 337
BsaJI CCNNGG 3 cut(s) 13, 69, 192
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 206, 207
Bse118I RCCGGY 3 cut(s) 128, 176, 229
Bse1I ACTGG 2 cut(s) 154, 488
Bse3DI GCAATG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 3 cut(s) 13, 69, 192
BseGI GGATG 2 cut(s) 141, 444
BseLI CCNNNNNNNGG 3 cut(s) 69, 206, 207
BseMI GCAATG 1 cut(s) 49
BseNI ACTGG 2 cut(s) 154, 488
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 5
BseYI CCCAGC 1 cut(s) 212
BshFI GGCC 5 cut(s) 132, 180, 211, 254, 426
BshNI GGYRCC 1 cut(s) 226
BsiSI CCGG 4 cut(s) 6, 129, 177, 230
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 3 cut(s) 69, 206, 207
BsmAI GTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 5 cut(s) 132, 180, 211, 254, 426
Bsp120I GGGCCC 1 cut(s) 209
Bsp1286I GDGCHC 3 cut(s) 76, 213, 413
Bsp143I GATC 4 cut(s) 24, 95, 349, 492
BspACI CCGC 5 cut(s) 126, 161, 174, 189, 242
BspANI GGCC 5 cut(s) 132, 180, 211, 254, 426
BspLI GGNNCC 5 cut(s) 198, 211, 228, 351, 412
BspPI GGATC 3 cut(s) 90, 344, 357
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 49
BsrFI RCCGGY 3 cut(s) 128, 176, 229
BsrI ACTGG 2 cut(s) 154, 488
BssAI RCCGGY 3 cut(s) 128, 176, 229
BssECI CCNNGG 3 cut(s) 13, 69, 192
BssMI GATC 4 cut(s) 24, 95, 349, 492
Bst2UI CCWGG 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 106
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 4 cut(s) 130, 178, 231, 390
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 141, 444
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 4 cut(s) 27, 98, 352, 495
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 4 cut(s) 24, 95, 349, 492
BstMWI GCNNNNNNNGC 5 cut(s) 15, 239, 251, 284, 476
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 349
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 5 cut(s) 132, 180, 211, 254, 426
BtgI CCRYGG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 141, 444
BtsIMutI CAGTG 1 cut(s) 495
Cac8I GCNNGC 4 cut(s) 130, 178, 231, 390
CfoI GCGC 1 cut(s) 515
Cfr10I RCCGGY 3 cut(s) 128, 176, 229
Cfr13I GGNCC 5 cut(s) 196, 209, 210, 253, 425
CviAII CATG 4 cut(s) 55, 389, 406, 476
DpnI GATC 4 cut(s) 26, 97, 351, 494
DpnII GATC 4 cut(s) 24, 95, 349, 492
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EciI GGCGGA 3 cut(s) 115, 150, 163
Eco24I GRGCYC 3 cut(s) 76, 213, 413
Eco47I GGWCC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 281
Eco72I CACGTG 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 68
EcoT38I GRGCYC 3 cut(s) 76, 213, 413
FaeI CATG 4 cut(s) 58, 392, 409, 479
FaiI YATR 5 cut(s) 56, 390, 407, 477, 523
FaqI GGGAC 1 cut(s) 182
FatI CATG 4 cut(s) 54, 388, 405, 475
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 19, 243, 516
FokI GGATG 2 cut(s) 128, 451
FriOI GRGCYC 3 cut(s) 76, 213, 413
Fsp4HI GCNGC 3 cut(s) 19, 243, 516
GlaI GCGC 1 cut(s) 514
GluI GCNGC 3 cut(s) 19, 243, 516
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 2 cut(s) 93, 397
HaeIII GGCC 5 cut(s) 132, 180, 211, 254, 426
HapII CCGG 4 cut(s) 6, 129, 177, 230
HhaI GCGC 1 cut(s) 515
Hin1II CATG 4 cut(s) 58, 392, 409, 479
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 1 cut(s) 116
HpaII CCGG 4 cut(s) 6, 129, 177, 230
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 37, 237
Hpy188I TCNGA 4 cut(s) 95, 310, 354, 449
Hpy188III TCNNGA 3 cut(s) 77, 110, 414
Hpy8I GTNNAC 2 cut(s) 37, 237
Hpy99I CGWCG 3 cut(s) 32, 38, 41
HpyAV CCTTC 2 cut(s) 211, 310
HpyCH4IV ACGT 2 cut(s) 150, 336
HpyCH4V TGCA 3 cut(s) 287, 388, 479
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 239, 251, 284, 476
HpySE526I ACGT 2 cut(s) 150, 336
Hsp92II CATG 4 cut(s) 58, 392, 409, 479
HspAI GCGC 1 cut(s) 513
KroI GCCGGC 3 cut(s) 128, 176, 229
KroNI GCCGGC 3 cut(s) 130, 178, 231
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 4 cut(s) 24, 95, 349, 492
LmnI GCTCC 3 cut(s) 96, 311, 416
Lsp1109I GCAGC 1 cut(s) 5
MaeII ACGT 2 cut(s) 150, 336
MalI GATC 4 cut(s) 26, 97, 351, 494
MboI GATC 4 cut(s) 24, 95, 349, 492
MboII GAAGA 2 cut(s) 93, 373
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 3 cut(s) 76, 213, 413
MluCI AATT 1 cut(s) 382
MlyI GAGTC 1 cut(s) 110
MroNI GCCGGC 3 cut(s) 128, 176, 229
MseI TTAA 1 cut(s) 432
MspI CCGG 4 cut(s) 6, 129, 177, 230
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 5 cut(s) 15, 239, 251, 284, 476
NaeI GCCGGC 3 cut(s) 130, 178, 231
NdeII GATC 4 cut(s) 24, 95, 349, 492
NgoMIV GCCGGC 3 cut(s) 128, 176, 229
NlaIII CATG 4 cut(s) 58, 392, 409, 479
NlaIV GGNNCC 5 cut(s) 198, 211, 228, 351, 412
NspI RCATGY 1 cut(s) 392
PaeI GCATGC 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdiI GCCGGC 3 cut(s) 130, 178, 231
PkrI GCNGC 3 cut(s) 20, 244, 517
PleI GAGTC 1 cut(s) 110
PmaCI CACGTG 1 cut(s) 337
PmlI CACGTG 1 cut(s) 337
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 68
PspCI CACGTG 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 5 cut(s) 198, 211, 228, 351, 412
PspOMI GGGCCC 1 cut(s) 209
PspPI GGNCC 5 cut(s) 196, 209, 210, 253, 425
PsuI RGATCY 1 cut(s) 349
SalI GTCGAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 3 cut(s) 19, 243, 516
Sau3AI GATC 4 cut(s) 24, 95, 349, 492
Sau96I GGNCC 5 cut(s) 196, 209, 210, 253, 425
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 3 cut(s) 76, 213, 413
SgrDI CGTCGACG 1 cut(s) 35
SinI GGWCC 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SphI GCATGC 1 cut(s) 392
Sse9I AATT 1 cut(s) 382
SsiI CCGC 5 cut(s) 126, 161, 174, 189, 242
StyD4I CCNGG 1 cut(s) 68
TaiI ACGT 2 cut(s) 153, 339
TaqI TCGA 3 cut(s) 36, 78, 249
TasI AATT 1 cut(s) 382
TauI GCSGC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 495
TseI GCWGC 2 cut(s) 18, 515
TspDTI ATGAA 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 1 cut(s) 495
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 1 cut(s) 382
XceI RCATGY 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.