Rh7AG455700

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010262
Physical Location & Seq
Forward (+)
62573855 .. 62578651
4797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG455700.1

Sequence Viewer

Length: 438 bp
ATGTCCGGCAACCTCGGCTGCGTGATCGTCGCCGTTGACGGCAGTGAGGAGAGCATGAGCGCCTTGACCTGGGCTCTCGACAACCTCAAGCTCCGATCCTCCTCTACTCCCGATTCCACCTCCGCCGGCCACTTCGTCGCCCTCCACGTCCAATCTCCGCCGTCAATCGCCGCTGGCCTCACTCCCGCCGCCATCCCCTTCGGTGGCCCCAGCGATTTGGAGGTGCCGGCGTTCACGGCGGCGATCGAGGCCCACCTGAAGCGGATCACAGAGGCCATTTTGGCACACGCTTTGAGGATTTGCTCCGAAAAGAAGGTGAATGTGAAAACCCAAGTGGTAGTTGGGGATCCGAAGGAGAAGATTTGTGAAGCTGTTGAGAATTTGCATGCTGACTTACTTGTCATGGGCTCCAGAGCTATTGGCCCTCTTAAAAGGTAA

Protein Analysis

145

Amino Acids

15.13

Weight (kDa)

6.18

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 8 - 145 3.1e-16 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 223
AciI CCGC 7 cut(s) 123, 158, 171, 186, 189, 239, 262
AclWI GGATC 4 cut(s) 90, 272, 341, 354
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 69, 203
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 3 cut(s) 91, 371, 416
AluI AGCT 3 cut(s) 91, 371, 416
AlwI GGATC 4 cut(s) 90, 272, 341, 354
AoxI GGCC 6 cut(s) 127, 175, 205, 249, 273, 421
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 379
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 3 cut(s) 206, 250, 422
AsuHPI GGTGA 1 cut(s) 328
BamHI GGATCC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 2 cut(s) 76, 410
BbvI GCAGC 1 cut(s) 5
BccI CCATC 1 cut(s) 200
BceAI ACGGC 4 cut(s) 17, 55, 145, 252
BciT130I CCWGG 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 63
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 4 cut(s) 19, 171, 189, 240
BlsI GCNGC 4 cut(s) 20, 172, 190, 241
Bme1390I CCNGG 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 206, 250, 422
BmiI GGNNCC 4 cut(s) 208, 225, 348, 409
BmrFI CCNGG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 13, 69
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 203
Bse118I RCCGGY 2 cut(s) 125, 226
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 13, 69
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 69, 203
BseRI GAGGAG 2 cut(s) 62, 91
BseXI GCAGC 1 cut(s) 5
BseYI CCCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 6 cut(s) 129, 177, 207, 251, 275, 423
BshNI GGYRCC 1 cut(s) 223
BsiEI CGRYCG 1 cut(s) 246
BsiSI CCGG 3 cut(s) 6, 126, 227
BslI CCNNNNNNNGG 2 cut(s) 69, 203
BsnI GGCC 6 cut(s) 129, 177, 207, 251, 275, 423
Bsp1286I GDGCHC 2 cut(s) 76, 410
Bsp143I GATC 5 cut(s) 24, 95, 243, 264, 346
BspACI CCGC 7 cut(s) 123, 158, 171, 186, 189, 239, 262
BspANI GGCC 6 cut(s) 129, 177, 207, 251, 275, 423
BspLI GGNNCC 4 cut(s) 208, 225, 348, 409
BspPI GGATC 4 cut(s) 90, 272, 341, 354
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 2 cut(s) 125, 226
BssAI RCCGGY 2 cut(s) 125, 226
BssECI CCNNGG 2 cut(s) 13, 69
BssMI GATC 5 cut(s) 24, 95, 243, 264, 346
Bst2UI CCWGG 1 cut(s) 70
BstC8I GCNNGC 4 cut(s) 127, 175, 228, 387
BstF5I GGATG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 5 cut(s) 27, 98, 246, 267, 349
BstMBI GATC 5 cut(s) 24, 95, 243, 264, 346
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 4 cut(s) 15, 236, 248, 281
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 6 cut(s) 129, 177, 207, 251, 275, 423
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 4 cut(s) 127, 175, 228, 387
CfoI GCGC 1 cut(s) 62
Cfr10I RCCGGY 2 cut(s) 125, 226
Cfr13I GGNCC 3 cut(s) 206, 250, 422
CviAII CATG 3 cut(s) 55, 386, 403
DpnI GATC 5 cut(s) 26, 97, 245, 266, 348
DpnII GATC 5 cut(s) 24, 95, 243, 264, 346
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 127
EciI GGCGGA 2 cut(s) 112, 147
Eco24I GRGCYC 2 cut(s) 76, 410
Eco57I CTGAAG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 68
EcoT38I GRGCYC 2 cut(s) 76, 410
FaeI CATG 3 cut(s) 58, 389, 406
FaiI YATR 3 cut(s) 56, 387, 404
FatI CATG 3 cut(s) 54, 385, 402
FauI CCCGC 1 cut(s) 193
Fnu4HI GCNGC 4 cut(s) 19, 171, 189, 240
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 2 cut(s) 76, 410
Fsp4HI GCNGC 4 cut(s) 19, 171, 189, 240
GlaI GCGC 1 cut(s) 61
GluI GCNGC 4 cut(s) 19, 171, 189, 240
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 394
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 6 cut(s) 129, 177, 207, 251, 275, 423
HapII CCGG 3 cut(s) 6, 126, 227
HhaI GCGC 1 cut(s) 62
Hin1II CATG 3 cut(s) 58, 389, 406
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 1 cut(s) 113
HpaII CCGG 3 cut(s) 6, 126, 227
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 2 cut(s) 37, 234
Hpy188I TCNGA 3 cut(s) 95, 307, 351
Hpy188III TCNNGA 3 cut(s) 77, 110, 411
Hpy8I GTNNAC 2 cut(s) 37, 234
Hpy99I CGWCG 2 cut(s) 32, 140
HpyAV CCTTC 3 cut(s) 208, 307, 346
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 236, 248, 281
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 58, 389, 406
HspAI GCGC 1 cut(s) 60
KroI GCCGGC 2 cut(s) 125, 226
KroNI GCCGGC 2 cut(s) 127, 228
Kzo9I GATC 5 cut(s) 24, 95, 243, 264, 346
LmnI GCTCC 3 cut(s) 96, 308, 413
LpnPI CCDG 9 cut(s) 19, 55, 82, 139, 159, 223, 240, 269, 424
Lsp1109I GCAGC 1 cut(s) 5
MaeII ACGT 1 cut(s) 147
MalI GATC 5 cut(s) 26, 97, 245, 266, 348
MboI GATC 5 cut(s) 24, 95, 243, 264, 346
MboII GAAGA 1 cut(s) 370
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 2 cut(s) 76, 410
MluCI AATT 1 cut(s) 379
MroNI GCCGGC 2 cut(s) 125, 226
MseI TTAA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 3 cut(s) 6, 126, 227
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 4 cut(s) 15, 236, 248, 281
NaeI GCCGGC 2 cut(s) 127, 228
NdeII GATC 5 cut(s) 24, 95, 243, 264, 346
NgoMIV GCCGGC 2 cut(s) 125, 226
NlaIII CATG 3 cut(s) 58, 389, 406
NlaIV GGNNCC 4 cut(s) 208, 225, 348, 409
NspI RCATGY 1 cut(s) 389
PaeI GCATGC 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdiI GCCGGC 2 cut(s) 127, 228
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 4 cut(s) 20, 172, 190, 241
Ple19I CGATCG 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 4 cut(s) 208, 225, 348, 409
PspPI GGNCC 3 cut(s) 206, 250, 422
PsuI RGATCY 1 cut(s) 346
PvuI CGATCG 1 cut(s) 246
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 4 cut(s) 19, 171, 189, 240
Sau3AI GATC 5 cut(s) 24, 95, 243, 264, 346
Sau96I GGNCC 3 cut(s) 206, 250, 422
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 2 cut(s) 76, 410
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SphI GCATGC 1 cut(s) 389
Sse9I AATT 1 cut(s) 379
SsiI CCGC 7 cut(s) 123, 158, 171, 186, 189, 239, 262
StyD4I CCNGG 1 cut(s) 68
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 78, 246
TasI AATT 1 cut(s) 379
TauI GCSGC 3 cut(s) 173, 191, 242
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 18
TspRI CASTG 1 cut(s) 49
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.