Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010262

Physical Location & Seq

Genomic Coordinates Reverse (-)

43314844 .. 43319620

Gene Structure 4777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G529900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTGGGAACCTCGGATGCGTGATCGTGGCCGTCGATGGCAGCGAGGAGAGCATGAACGCCTTGAGCTGGGCCCTCGACAACCTCAAGCTCCGATCCCCTGCCCCCGATTCCACCACCTCCGCAGGCCACTTCGTCGTCCTCCACGTCCAATCTCCGCCGTCCATCGCCGCCGGCCTCAGCCCCCCCGCCATTCCCTTCGGTGGGCCCAGCGATGTGGAGGTGCCTGCGTTCAACGCTGCGATCGAGGCGCACCAGAGGCGAATCACGGAGGCCATATTGGAATACGCTTTGAGGATTTGTTCCGAGAAGAAGGTGAATGTGAAAACCCAAGTGGTTGTTGGGGATCCGAAGGAGAAAATTGGTGAAGCTGCTGAGAATTTGCATGCTGATTTGCTTGTCATGGGGTCCAGAGCTTTTGGTCCTCTAAAAAGGATGTTTCTGGGAAGTGTAAGCAATTATTGCGCTAACCATGTGCAATGTCCAATCATCATCATCAAGGGAAAGGTGGCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

173

Amino Acids

18.12

Weight (kDa)

6.51

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09740 AT1G09740
fragaria_vesca	FvH4_5g35520 FvH4_5g35520
malus_domestica	MD15G1383800.v1.1
prunus_persica	Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1
pyrus_communis	pycom15g34340
rosa_chinensis	RchiOBHm_Chr7g0236901
rosa_laevigata	RLG00000001049
rosa_multiflora	Rmu_sc0010895.1_g000002 Rmu_sc0028822.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224700
rosa_rugosa	Rorug07G0300900 Rorug07G0300900 Rorug07G0300900
rosa_samantha	Rh7AG455700 Rh7CG474400 Rh7DG443600
rosa_wichuraiana	Rw7G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	4 cut(s)	123, 158, 171, 189
AclWI	GGATC	3 cut(s)	90, 341, 354
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	379
AfiI	CCNNNNNNNGG	3 cut(s)	69, 203, 204
AgsI	TTSAA	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	148
AluBI	AGCT	4 cut(s)	69, 91, 371, 416
AluI	AGCT	4 cut(s)	69, 91, 371, 416
AlwI	GGATC	3 cut(s)	90, 341, 354
AoxI	GGCC	6 cut(s)	30, 72, 127, 175, 206, 273
ApaI	GGGCCC	2 cut(s)	76, 210
ApeKI	GCWGC	3 cut(s)	42, 239, 371
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	2 cut(s)	253, 467
AspS9I	GGNCC	6 cut(s)	72, 73, 206, 207, 408, 422
AsuHPI	GGTGA	2 cut(s)	328, 377
AvaII	GGWCC	2 cut(s)	408, 422
BaeGI	GKGCMC	2 cut(s)	76, 210
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	2 cut(s)	76, 210
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	54, 226, 358
BccI	CCATC	2 cut(s)	32, 173
BceAI	ACGGC	2 cut(s)	17, 145
BisI	GCNGC	4 cut(s)	43, 171, 240, 372
BlsI	GCNGC	4 cut(s)	44, 172, 241, 373
Bme18I	GGWCC	2 cut(s)	408, 422
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	6 cut(s)	72, 73, 206, 207, 408, 422
BmiI	GGNNCC	6 cut(s)	11, 74, 208, 225, 348, 409
BmsI	GCATC	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	2 cut(s)	71, 85
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 203, 204
Bse118I	RCCGGY	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	2 cut(s)	23, 441
BseLI	CCNNNNNNNGG	3 cut(s)	69, 203, 204
BseMI	GCAATG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	193, 366
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	2 cut(s)	76, 210
BseXI	GCAGC	3 cut(s)	54, 226, 358
BseYI	CCCAGC	3 cut(s)	5, 69, 209
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	6 cut(s)	32, 74, 129, 177, 208, 275
BshNI	GGYRCC	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	3 cut(s)	69, 203, 204
BsnI	GGCC	6 cut(s)	32, 74, 129, 177, 208, 275
Bsp120I	GGGCCC	2 cut(s)	72, 206
Bsp1286I	GDGCHC	2 cut(s)	76, 210
Bsp143I	GATC	4 cut(s)	24, 95, 243, 346
BspACI	CCGC	4 cut(s)	123, 158, 171, 189
BspANI	GGCC	6 cut(s)	32, 74, 129, 177, 208, 275
BspCNI	CTCAG	2 cut(s)	192, 367
BspLI	GGNNCC	6 cut(s)	11, 74, 208, 225, 348, 409
BspPI	GGATC	3 cut(s)	90, 341, 354
BspT107I	GGYRCC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	4 cut(s)	24, 95, 243, 346
BstAPI	GCANNNNNTGC	1 cut(s)	462
BstC8I	GCNNGC	4 cut(s)	127, 175, 228, 387
BstDEI	CTNAG	2 cut(s)	179, 375
BstF5I	GGATG	2 cut(s)	23, 441
BstHHI	GCGC	2 cut(s)	253, 467
BstKTI	GATC	4 cut(s)	27, 98, 246, 349
BstMBI	GATC	4 cut(s)	24, 95, 243, 346
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 236, 248, 259, 462
BstNSI	RCATGY	1 cut(s)	389
BstSLI	GKGCMC	2 cut(s)	76, 210
BstV1I	GCAGC	3 cut(s)	54, 226, 358
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	6 cut(s)	32, 74, 129, 177, 208, 275
BtgZI	GCGATG	2 cut(s)	151, 228
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	23, 441
Cac8I	GCNNGC	4 cut(s)	127, 175, 228, 387
CfoI	GCGC	2 cut(s)	253, 467
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	6 cut(s)	72, 73, 206, 207, 408, 422
CviAII	CATG	4 cut(s)	55, 386, 403, 473
DdeI	CTNAG	2 cut(s)	179, 375
DpnI	GATC	4 cut(s)	26, 97, 245, 348
DpnII	GATC	4 cut(s)	24, 95, 243, 346
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	147
Eco24I	GRGCYC	2 cut(s)	76, 210
Eco47I	GGWCC	2 cut(s)	408, 422
EcoO109I	RGGNCCY	1 cut(s)	73
EcoT38I	GRGCYC	2 cut(s)	76, 210
FaeI	CATG	4 cut(s)	58, 389, 406, 476
FaiI	YATR	5 cut(s)	56, 278, 387, 404, 474
FatI	CATG	4 cut(s)	54, 385, 402, 472
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	43, 171, 240, 372
FokI	GGATG	2 cut(s)	30, 448
FriOI	GRGCYC	2 cut(s)	76, 210
Fsp4HI	GCNGC	4 cut(s)	43, 171, 240, 372
GlaI	GCGC	2 cut(s)	252, 466
GluI	GCNGC	4 cut(s)	43, 171, 240, 372
GsaI	CCCAGC	3 cut(s)	9, 73, 213
HaeIII	GGCC	6 cut(s)	32, 74, 129, 177, 208, 275
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	2 cut(s)	253, 467
Hin1II	CATG	4 cut(s)	58, 389, 406, 476
Hin6I	GCGC	2 cut(s)	251, 465
HinP1I	GCGC	2 cut(s)	251, 465
HinfI	GANTC	2 cut(s)	110, 264
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	2 cut(s)	328, 377
Hpy188I	TCNGA	4 cut(s)	17, 95, 307, 351
Hpy188III	TCNNGA	2 cut(s)	411, 516
Hpy99I	CGWCG	2 cut(s)	38, 140
HpyAV	CCTTC	3 cut(s)	208, 307, 346
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	385, 478
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 236, 248, 259, 462
HpyF3I	CTNAG	2 cut(s)	179, 375
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	58, 389, 406, 476
HspAI	GCGC	2 cut(s)	251, 465
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	24, 95, 243, 346
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	9 cut(s)	55, 111, 114, 187, 223, 240, 269, 424, 428
Lsp1109I	GCAGC	3 cut(s)	54, 226, 358
LweI	GCATC	1 cut(s)	8
MaeII	ACGT	1 cut(s)	147
MalI	GATC	4 cut(s)	26, 97, 245, 348
MboI	GATC	4 cut(s)	24, 95, 243, 346
MboII	GAAGA	1 cut(s)	322
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	76, 210
MluCI	AATT	3 cut(s)	360, 379, 457
MroNI	GCCGGC	1 cut(s)	173
MspI	CCGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	5 cut(s)	51, 236, 248, 259, 462
NaeI	GCCGGC	1 cut(s)	175
NdeII	GATC	4 cut(s)	24, 95, 243, 346
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	4 cut(s)	58, 389, 406, 476
NlaIV	GGNNCC	6 cut(s)	11, 74, 208, 225, 348, 409
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 42, 144, 243
PdiI	GCCGGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	110, 264
PkrI	GCNGC	4 cut(s)	44, 172, 241, 373
Ple19I	CGATCG	1 cut(s)	246
PspFI	CCCAGC	3 cut(s)	5, 69, 209
PspN4I	GGNNCC	6 cut(s)	11, 74, 208, 225, 348, 409
PspOMI	GGGCCC	2 cut(s)	72, 206
PspPI	GGNCC	6 cut(s)	72, 73, 206, 207, 408, 422
PsuI	RGATCY	1 cut(s)	346
PvuI	CGATCG	1 cut(s)	246
SatI	GCNGC	4 cut(s)	43, 171, 240, 372
Sau3AI	GATC	4 cut(s)	24, 95, 243, 346
Sau96I	GGNCC	6 cut(s)	72, 73, 206, 207, 408, 422
SduI	GDGCHC	2 cut(s)	76, 210
SfaNI	GCATC	1 cut(s)	8
SinI	GGWCC	2 cut(s)	408, 422
SmlI	CTYRAG	2 cut(s)	64, 86
SmoI	CTYRAG	2 cut(s)	64, 86
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	3 cut(s)	360, 379, 457
SsiI	CCGC	4 cut(s)	123, 158, 171, 189
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	36, 78, 246
TasI	AATT	3 cut(s)	360, 379, 457
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	110, 264
TseI	GCWGC	3 cut(s)	42, 239, 371
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	408, 422
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.