Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010895.1

Orthogroup ID

OG0010262

Physical Location & Seq

Genomic Coordinates Forward (+)

2724 .. 3963

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010895.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgtccggcaacctcggctgcgtgatcgtcgccgttgacggcagtgaggagagcatgagcgccttgacctgggcgctcgacaacctcaagctccgatcctcctctactcccgactccacctgcgccggccacttcgtcgtcctccacgtccaatctccgccgtcaatcgccgctggcctcactcccgccgccatccccttcggcgatttggaggtgccggcgttcacggcggcgatcgaggcccacctgaagcgaatcacggaggctattctagcacacgctttgaggatttgctccgaaaagaaggtgattgtgaaaacccaagtggtagttggggatccaaaggagaagatttgtgaagctgttgagaatttgcatgctgacttacttgtcatgggctccagagctattggccctcttaaaaggatgtttcttggaagtgtgagcaactattgcgctaactatgcacaatgccccgtgatcatttccaaggcaaagggcgctgcgtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

170

Amino Acids

17.81

Weight (kDa)

6.94

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09740 AT1G09740
fragaria_vesca	FvH4_5g35520 FvH4_5g35520
malus_domestica	MD15G1383800.v1.1
prunus_persica	Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1
pyrus_communis	pycom15g34340
rosa_chinensis	RchiOBHm_Chr7g0236901
rosa_laevigata	RLG00000001049
rosa_multiflora	Rmu_sc0010895.1_g000002 Rmu_sc0028822.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224700
rosa_rugosa	Rorug07G0300900 Rorug07G0300900 Rorug07G0300900
rosa_samantha	Rh7AG455700 Rh7CG474400 Rh7DG443600
rosa_wichuraiana	Rw7G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	128
AasI	GACNNNNNNGTC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	214
AciI	CCGC	5 cut(s)	158, 171, 186, 189, 230
AclWI	GGATC	3 cut(s)	90, 332, 345
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	69
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	91, 362, 407
AluI	AGCT	3 cut(s)	91, 362, 407
AlwI	GGATC	3 cut(s)	90, 332, 345
AoxI	GGCC	4 cut(s)	127, 175, 240, 412
ApeKI	GCWGC	2 cut(s)	18, 503
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	5 cut(s)	62, 76, 125, 458, 503
AspS9I	GGNCC	2 cut(s)	241, 413
AsuHPI	GGTGA	1 cut(s)	319
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	5, 490
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	4 cut(s)	17, 55, 145, 243
BciT130I	CCWGG	1 cut(s)	70
BclI	TGATCA	1 cut(s)	480
BfaI	CTAG	1 cut(s)	272
BfoI	RGCGCY	3 cut(s)	63, 77, 504
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	5 cut(s)	19, 171, 189, 231, 504
BlsI	GCNGC	5 cut(s)	20, 172, 190, 232, 505
Bme1390I	CCNGG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	241, 413
BmiI	GGNNCC	3 cut(s)	216, 339, 400
BmrFI	CCNGG	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	385
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	13, 69, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	2 cut(s)	125, 217
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	3 cut(s)	13, 69, 489
BseGI	GGATG	2 cut(s)	192, 432
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	62, 91
BseXI	GCAGC	2 cut(s)	5, 490
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	129, 177, 242, 414
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	6, 126, 218
BslI	CCNNNNNNNGG	1 cut(s)	69
BsnI	GGCC	4 cut(s)	129, 177, 242, 414
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	5 cut(s)	24, 95, 234, 337, 480
BspACI	CCGC	5 cut(s)	158, 171, 186, 189, 230
BspANI	GGCC	4 cut(s)	129, 177, 242, 414
BspLI	GGNNCC	3 cut(s)	216, 339, 400
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	3 cut(s)	90, 332, 345
BspT107I	GGYRCC	1 cut(s)	214
BsrFI	RCCGGY	2 cut(s)	125, 217
BssAI	RCCGGY	2 cut(s)	125, 217
BssECI	CCNNGG	3 cut(s)	13, 69, 489
BssMI	GATC	5 cut(s)	24, 95, 234, 337, 480
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	453
BstC8I	GCNNGC	4 cut(s)	127, 175, 219, 378
BstF5I	GGATG	2 cut(s)	192, 432
BstH2I	RGCGCY	3 cut(s)	63, 77, 504
BstHHI	GCGC	5 cut(s)	62, 76, 125, 458, 503
BstKTI	GATC	5 cut(s)	27, 98, 237, 340, 483
BstMBI	GATC	5 cut(s)	24, 95, 234, 337, 480
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 227, 239, 272, 453, 464, 500
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	5, 490
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	4 cut(s)	129, 177, 242, 414
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	192, 432
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	4 cut(s)	127, 175, 219, 378
CfoI	GCGC	5 cut(s)	62, 76, 125, 458, 503
Cfr10I	RCCGGY	2 cut(s)	125, 217
Cfr13I	GGNCC	2 cut(s)	241, 413
CseI	GACGC	1 cut(s)	495
CviAII	CATG	3 cut(s)	55, 377, 394
DpnI	GATC	5 cut(s)	26, 97, 236, 339, 482
DpnII	GATC	5 cut(s)	24, 95, 234, 337, 480
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
EaeI	YGGCCR	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	58, 380, 397
FaiI	YATR	5 cut(s)	56, 378, 395, 465, 511
FatI	CATG	3 cut(s)	54, 376, 393
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	5 cut(s)	19, 171, 189, 231, 504
FokI	GGATG	2 cut(s)	179, 439
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	5 cut(s)	19, 171, 189, 231, 504
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	5 cut(s)	61, 75, 124, 457, 502
GluI	GCNGC	5 cut(s)	19, 171, 189, 231, 504
GsuI	CTGGAG	1 cut(s)	385
HaeII	RGCGCY	3 cut(s)	63, 77, 504
HaeIII	GGCC	4 cut(s)	129, 177, 242, 414
HapII	CCGG	3 cut(s)	6, 126, 218
HgaI	GACGC	1 cut(s)	495
HhaI	GCGC	5 cut(s)	62, 76, 125, 458, 503
Hin1II	CATG	3 cut(s)	58, 380, 397
Hin6I	GCGC	5 cut(s)	60, 74, 123, 456, 501
HinP1I	GCGC	5 cut(s)	60, 74, 123, 456, 501
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	113, 255
HpaII	CCGG	3 cut(s)	6, 126, 218
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	37, 225
Hpy188I	TCNGA	2 cut(s)	95, 298
Hpy188III	TCNNGA	2 cut(s)	110, 402
Hpy8I	GTNNAC	2 cut(s)	37, 225
Hpy99I	CGWCG	2 cut(s)	32, 140
HpyAV	CCTTC	2 cut(s)	208, 298
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	376, 467
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 227, 239, 272, 453, 464, 500
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	58, 380, 397
HspAI	GCGC	5 cut(s)	60, 74, 123, 456, 501
KroI	GCCGGC	2 cut(s)	125, 217
KroNI	GCCGGC	2 cut(s)	127, 219
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	5 cut(s)	24, 95, 234, 337, 480
LmnI	GCTCC	3 cut(s)	96, 299, 404
LpnPI	CCDG	9 cut(s)	19, 55, 82, 133, 139, 159, 231, 260, 415
Lsp1109I	GCAGC	2 cut(s)	5, 490
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	147
MalI	GATC	5 cut(s)	26, 97, 236, 339, 482
MboI	GATC	5 cut(s)	24, 95, 234, 337, 480
MboII	GAAGA	1 cut(s)	361
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	107
MroNI	GCCGGC	2 cut(s)	125, 217
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	3 cut(s)	6, 126, 218
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	7 cut(s)	15, 227, 239, 272, 453, 464, 500
NaeI	GCCGGC	2 cut(s)	127, 219
NdeII	GATC	5 cut(s)	24, 95, 234, 337, 480
NgoMIV	GCCGGC	2 cut(s)	125, 217
NlaIII	CATG	3 cut(s)	58, 380, 397
NlaIV	GGNNCC	3 cut(s)	216, 339, 400
NspI	RCATGY	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	380
PaqCI	CACCTGC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdiI	GCCGGC	2 cut(s)	127, 219
PfeI	GAWTC	1 cut(s)	255
PkrI	GCNGC	5 cut(s)	20, 172, 190, 232, 505
Ple19I	CGATCG	1 cut(s)	237
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	216, 339, 400
PspPI	GGNCC	2 cut(s)	241, 413
PsuI	RGATCY	1 cut(s)	337
PvuI	CGATCG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	5 cut(s)	19, 171, 189, 231, 504
Sau3AI	GATC	5 cut(s)	24, 95, 234, 337, 480
Sau96I	GGNCC	2 cut(s)	241, 413
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	5 cut(s)	158, 171, 186, 189, 230
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	489
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	78, 237
TasI	AATT	1 cut(s)	370
TauI	GCSGC	3 cut(s)	173, 191, 233
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	2 cut(s)	18, 503
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	49
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.