Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010262

Physical Location & Seq

Genomic Coordinates Reverse (-)

33993716 .. 33994423

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACCGGAAACCTCGGATGCGTGATCGTGGCCGTTGATGGCAGCGAGGAGAGCATGAACGCCTTGACCTGGGCCCTCGACAACCTCAAGCTCCGATCCTCTGCACCCGACTCCACCACCTCCGCCGGCCACTTCGTCGTCCTCCACGTCCAGCCTCCGCCCTCCATCGCAGCCGGCCTCAGTCCCCCGGCCATTCCCTTCGGTGGTCCCAACGATTTGGAGGTGCCGGCGTTCACGGCGGCGATCGAGGCGCACCAGAGGCGGATTACGGAGGTCATAATTGAACACGCTTTGAAAATTTGCTCCGAAAAGAAGGTAAATGTGAAAACCCAAGTGGTTGTTGGGGATCCTAAGGAGAAAATTGGTGAAGCTGTTGAGAATTTGCATGCTGATTTGCTTGTCATGGGGTCCAGGGCTTTTGGCCCAATTAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

146

Amino Acids

15.32

Weight (kDa)

5.92

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	8 - 142	5.2e-15	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09740 AT1G09740
fragaria_vesca	FvH4_5g35520 FvH4_5g35520
malus_domestica	MD15G1383800.v1.1
prunus_persica	Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1
pyrus_communis	pycom15g34340
rosa_chinensis	RchiOBHm_Chr7g0236901
rosa_laevigata	RLG00000001049
rosa_multiflora	Rmu_sc0010895.1_g000002 Rmu_sc0028822.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224700
rosa_rugosa	Rorug07G0300900 Rorug07G0300900 Rorug07G0300900
rosa_samantha	Rh7AG455700 Rh7CG474400 Rh7DG443600
rosa_wichuraiana	Rw7G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	4 cut(s)	123, 158, 239, 262
AclWI	GGATC	3 cut(s)	90, 341, 354
AcoI	YGGCCR	3 cut(s)	30, 127, 189
AcsI	RAATTY	2 cut(s)	297, 379
AfiI	CCNNNNNNNGG	2 cut(s)	69, 203
AgsI	TTSAA	2 cut(s)	284, 295
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	68, 410
AluBI	AGCT	2 cut(s)	91, 371
AluI	AGCT	2 cut(s)	91, 371
AlwI	GGATC	3 cut(s)	90, 341, 354
AoxI	GGCC	6 cut(s)	30, 72, 127, 175, 189, 421
ApaI	GGGCCC	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	42, 170
ApoI	RAATTY	2 cut(s)	297, 379
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	5 cut(s)	72, 73, 206, 408, 422
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	206, 408
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	54, 182
BccI	CCATC	2 cut(s)	32, 173
BceAI	ACGGC	2 cut(s)	17, 252
BciT130I	CCWGG	2 cut(s)	70, 412
BcnI	CCSGG	1 cut(s)	188
BisI	GCNGC	3 cut(s)	43, 171, 240
BlsI	GCNGC	3 cut(s)	44, 172, 241
Bme1390I	CCNGG	3 cut(s)	70, 188, 412
Bme18I	GGWCC	2 cut(s)	206, 408
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	5 cut(s)	72, 73, 206, 408, 422
BmiI	GGNNCC	5 cut(s)	74, 208, 225, 348, 409
BmrFI	CCNGG	3 cut(s)	70, 188, 412
BmsI	GCATC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	4 cut(s)	13, 69, 186, 411
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 203
Bse118I	RCCGGY	3 cut(s)	125, 173, 226
Bse21I	CCTNAGG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	70, 412
BseDI	CCNNGG	4 cut(s)	13, 69, 186, 411
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	2 cut(s)	69, 203
BseMII	CTCAG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	54, 182
BsgI	GTGCAG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	6 cut(s)	32, 74, 129, 177, 191, 423
BshNI	GGYRCC	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	5 cut(s)	6, 126, 174, 188, 227
BslFI	GGGAC	2 cut(s)	168, 192
BslI	CCNNNNNNNGG	2 cut(s)	69, 203
BsmFI	GGGAC	2 cut(s)	168, 192
BsnI	GGCC	6 cut(s)	32, 74, 129, 177, 191, 423
Bsp120I	GGGCCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	24, 95, 243, 346
BspACI	CCGC	4 cut(s)	123, 158, 239, 262
BspANI	GGCC	6 cut(s)	32, 74, 129, 177, 191, 423
BspCNI	CTCAG	1 cut(s)	192
BspLI	GGNNCC	5 cut(s)	74, 208, 225, 348, 409
BspPI	GGATC	3 cut(s)	90, 341, 354
BspT107I	GGYRCC	1 cut(s)	223
BsrFI	RCCGGY	3 cut(s)	125, 173, 226
BssAI	RCCGGY	3 cut(s)	125, 173, 226
BssECI	CCNNGG	4 cut(s)	13, 69, 186, 411
BssMI	GATC	4 cut(s)	24, 95, 243, 346
Bst2UI	CCWGG	2 cut(s)	70, 412
BstC8I	GCNNGC	4 cut(s)	127, 175, 228, 387
BstDEI	CTNAG	2 cut(s)	179, 351
BstF5I	GGATG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	4 cut(s)	27, 98, 246, 349
BstMBI	GATC	4 cut(s)	24, 95, 243, 346
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 236, 248, 259
BstNI	CCWGG	2 cut(s)	70, 412
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	3 cut(s)	68, 186, 410
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	54, 182
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	346
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	6 cut(s)	32, 74, 129, 177, 191, 423
BtgZI	GCGATG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	23
Cac8I	GCNNGC	4 cut(s)	127, 175, 228, 387
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	3 cut(s)	125, 173, 226
Cfr13I	GGNCC	5 cut(s)	72, 73, 206, 408, 422
CviAII	CATG	3 cut(s)	55, 386, 403
DdeI	CTNAG	2 cut(s)	179, 351
DpnI	GATC	4 cut(s)	26, 97, 245, 348
DpnII	GATC	4 cut(s)	24, 95, 243, 346
EaeI	YGGCCR	3 cut(s)	30, 127, 189
EciI	GGCGGA	3 cut(s)	112, 147, 277
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	206, 408
Eco81I	CCTNAGG	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	68, 410
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	3 cut(s)	58, 389, 406
FaiI	YATR	4 cut(s)	56, 278, 387, 404
FaqI	GGGAC	2 cut(s)	168, 192
FatI	CATG	3 cut(s)	54, 385, 402
Fnu4HI	GCNGC	3 cut(s)	43, 171, 240
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	3 cut(s)	43, 171, 240
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	3 cut(s)	43, 171, 240
HaeIII	GGCC	6 cut(s)	32, 74, 129, 177, 191, 423
HapII	CCGG	5 cut(s)	6, 126, 174, 188, 227
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	3 cut(s)	58, 389, 406
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	5 cut(s)	6, 126, 174, 188, 227
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	3 cut(s)	17, 95, 307
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	208, 307
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	104, 385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 236, 248, 259
HpyF3I	CTNAG	2 cut(s)	179, 351
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	58, 389, 406
HspAI	GCGC	1 cut(s)	251
KroI	GCCGGC	3 cut(s)	125, 173, 226
KroNI	GCCGGC	3 cut(s)	127, 175, 228
Kzo9I	GATC	4 cut(s)	24, 95, 243, 346
LmnI	GCTCC	2 cut(s)	96, 308
Lsp1109I	GCAGC	2 cut(s)	54, 182
LweI	GCATC	1 cut(s)	8
MaeII	ACGT	1 cut(s)	147
MalI	GATC	4 cut(s)	26, 97, 245, 348
MboI	GATC	4 cut(s)	24, 95, 243, 346
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	5 cut(s)	279, 297, 360, 379, 426
MlyI	GAGTC	1 cut(s)	104
MroNI	GCCGGC	3 cut(s)	125, 173, 226
MseI	TTAA	1 cut(s)	429
MspI	CCGG	5 cut(s)	6, 126, 174, 188, 227
MspR9I	CCNGG	3 cut(s)	70, 188, 412
MvaI	CCWGG	2 cut(s)	70, 412
MwoI	GCNNNNNNNGC	4 cut(s)	51, 236, 248, 259
NaeI	GCCGGC	3 cut(s)	127, 175, 228
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	4 cut(s)	24, 95, 243, 346
NgoMIV	GCCGGC	3 cut(s)	125, 173, 226
NlaIII	CATG	3 cut(s)	58, 389, 406
NlaIV	GGNNCC	5 cut(s)	74, 208, 225, 348, 409
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdiI	GCCGGC	3 cut(s)	127, 175, 228
PkrI	GCNGC	3 cut(s)	44, 172, 241
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	68, 410
PspGI	CCWGG	2 cut(s)	68, 410
PspN4I	GGNNCC	5 cut(s)	74, 208, 225, 348, 409
PspOMI	GGGCCC	1 cut(s)	72
PspPI	GGNCC	5 cut(s)	72, 73, 206, 408, 422
PsuI	RGATCY	1 cut(s)	346
PvuI	CGATCG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	3 cut(s)	43, 171, 240
Sau3AI	GATC	4 cut(s)	24, 95, 243, 346
Sau96I	GGNCC	5 cut(s)	72, 73, 206, 408, 422
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	3 cut(s)	70, 188, 412
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	1 cut(s)	8
SinI	GGWCC	2 cut(s)	206, 408
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	5 cut(s)	279, 297, 360, 379, 426
SsiI	CCGC	4 cut(s)	123, 158, 239, 262
StyD4I	CCNGG	3 cut(s)	68, 186, 410
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	78, 246
TasI	AATT	5 cut(s)	279, 297, 360, 379, 426
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseI	GCWGC	2 cut(s)	42, 170
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	206, 408
XapI	RAATTY	2 cut(s)	297, 379
XceI	RCATGY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.