Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010262

Physical Location & Seq

Genomic Coordinates Reverse (-)

7940897 .. 7944721

Gene Structure 3825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCCGGCAACCTCGGCTGCGTGATCGTCGCCGTTGACGGCAGTGAGGAGAGCATGAGCGCCTTGACCTGGGCTCTCGACAACCTCAAGCTCCGATCCTCCTCTCCTCCCGACTCCACCTCCGCCGGCCACTTCGTCATCCTCCACGTCCAATCTCCGCCGTCAATCGCCGTTGGCCTCTCTCCCGCCGCCATCCCCTTCGGTGGCCCCTGCGATTTGGAGGTGCCGGCGTTCACTGCGGCGATCGAGGCCCACCTGAAGCGGATCACGGAGGCCATTTTGGCACACGCTTTGAGGATTTGCTCCGAAAAGAAGGTGAATGTGAAAACCCAAGTGGTAGTTGGGGATCCGAAGGAGAAGATTTGTGAAGCTGTTGAGAATTTGCATGCTGACTTACTTGTCATGGGCTCCAGAGCTATTGGCCCTCTTAAAAGGATGTTTCTTGGAAGTGTGAGCAACTATTGCGCTAACCATGCACAATGCCCCGTGATCATTTCCAAGGCAAAGGGCGCCACGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

173

Amino Acids

18.08

Weight (kDa)

6.99

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	85 - 166	4.6e-23	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09740 AT1G09740
fragaria_vesca	FvH4_5g35520 FvH4_5g35520
malus_domestica	MD15G1383800.v1.1
prunus_persica	Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1 Prupe.1G529900_v2.0.a1
pyrus_communis	pycom15g34340
rosa_chinensis	RchiOBHm_Chr7g0236901
rosa_laevigata	RLG00000001049
rosa_multiflora	Rmu_sc0010895.1_g000002 Rmu_sc0028822.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224700
rosa_rugosa	Rorug07G0300900 Rorug07G0300900 Rorug07G0300900
rosa_samantha	Rh7AG455700 Rh7CG474400 Rh7DG443600
rosa_wichuraiana	Rw7G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
AccB1I	GGYRCC	2 cut(s)	223, 509
AciI	CCGC	6 cut(s)	123, 158, 186, 189, 239, 262
AclWI	GGATC	4 cut(s)	90, 272, 341, 354
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	510
AfiI	CCNNNNNNNGG	2 cut(s)	69, 203
AjiI	CACGTC	2 cut(s)	148, 516
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	91, 371, 416
AluI	AGCT	3 cut(s)	91, 371, 416
AlwI	GGATC	4 cut(s)	90, 272, 341, 354
AoxI	GGCC	6 cut(s)	127, 175, 205, 249, 273, 421
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	3 cut(s)	62, 467, 512
AspS9I	GGNCC	3 cut(s)	206, 250, 422
AsuHPI	GGTGA	1 cut(s)	328
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	2 cut(s)	223, 509
BanII	GRGCYC	2 cut(s)	76, 410
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	4 cut(s)	17, 55, 145, 155
BciT130I	CCWGG	1 cut(s)	70
BclI	TGATCA	1 cut(s)	489
BfoI	RGCGCY	2 cut(s)	63, 513
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	3 cut(s)	19, 189, 240
BlsI	GCNGC	3 cut(s)	20, 190, 241
Bme1390I	CCNGG	1 cut(s)	70
BmgBI	CACGTC	2 cut(s)	148, 516
BmgT120I	GGNCC	3 cut(s)	206, 250, 422
BmiI	GGNNCC	5 cut(s)	208, 225, 348, 409, 511
BmrFI	CCNGG	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	13, 69, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 203
Bse118I	RCCGGY	2 cut(s)	125, 226
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	3 cut(s)	13, 69, 498
BseGI	GGATG	3 cut(s)	138, 192, 441
BseLI	CCNNNNNNNGG	2 cut(s)	69, 203
BseRI	GAGGAG	3 cut(s)	62, 91, 96
BseXI	GCAGC	1 cut(s)	5
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	6 cut(s)	129, 177, 207, 251, 275, 423
BshNI	GGYRCC	2 cut(s)	223, 509
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	6, 126, 227
BslI	CCNNNNNNNGG	2 cut(s)	69, 203
BsnI	GGCC	6 cut(s)	129, 177, 207, 251, 275, 423
Bsp1286I	GDGCHC	2 cut(s)	76, 410
Bsp143I	GATC	6 cut(s)	24, 95, 243, 264, 346, 489
BspACI	CCGC	6 cut(s)	123, 158, 186, 189, 239, 262
BspANI	GGCC	6 cut(s)	129, 177, 207, 251, 275, 423
BspLI	GGNNCC	5 cut(s)	208, 225, 348, 409, 511
BspPI	GGATC	4 cut(s)	90, 272, 341, 354
BspT107I	GGYRCC	2 cut(s)	223, 509
BsrFI	RCCGGY	2 cut(s)	125, 226
BssAI	RCCGGY	2 cut(s)	125, 226
BssECI	CCNNGG	3 cut(s)	13, 69, 498
BssMI	GATC	6 cut(s)	24, 95, 243, 264, 346, 489
BssNI	GRCGYC	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	510
BstAPI	GCANNNNNTGC	1 cut(s)	462
BstC8I	GCNNGC	3 cut(s)	127, 228, 387
BstF5I	GGATG	3 cut(s)	138, 192, 441
BstH2I	RGCGCY	2 cut(s)	63, 513
BstHHI	GCGC	3 cut(s)	62, 467, 512
BstKTI	GATC	6 cut(s)	27, 98, 246, 267, 349, 492
BstMBI	GATC	6 cut(s)	24, 95, 243, 264, 346, 489
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 236, 248, 281, 462, 473, 509
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	6 cut(s)	129, 177, 207, 251, 275, 423
BtrI	CACGTC	2 cut(s)	148, 516
BtsCI	GGATG	3 cut(s)	138, 192, 441
BtsI	GCAGTG	2 cut(s)	49, 234
BtsIMutI	CAGTG	2 cut(s)	49, 234
Cac8I	GCNNGC	3 cut(s)	127, 228, 387
CfoI	GCGC	3 cut(s)	62, 467, 512
Cfr10I	RCCGGY	2 cut(s)	125, 226
Cfr13I	GGNCC	3 cut(s)	206, 250, 422
CviAII	CATG	4 cut(s)	55, 386, 403, 473
DinI	GGCGCC	1 cut(s)	511
DpnI	GATC	6 cut(s)	26, 97, 245, 266, 348, 491
DpnII	GATC	6 cut(s)	24, 95, 243, 264, 346, 489
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	127
EciI	GGCGGA	2 cut(s)	112, 147
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	2 cut(s)	76, 410
Eco57I	CTGAAG	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	2 cut(s)	76, 410
EgeI	GGCGCC	1 cut(s)	511
EheI	GGCGCC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	4 cut(s)	58, 389, 406, 476
FaiI	YATR	5 cut(s)	56, 387, 404, 474, 520
FatI	CATG	4 cut(s)	54, 385, 402, 472
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	19, 189, 240
FokI	GGATG	3 cut(s)	125, 179, 448
FriOI	GRGCYC	2 cut(s)	76, 410
Fsp4HI	GCNGC	3 cut(s)	19, 189, 240
GlaI	GCGC	3 cut(s)	61, 466, 511
GluI	GCNGC	3 cut(s)	19, 189, 240
GsuI	CTGGAG	1 cut(s)	394
HaeII	RGCGCY	2 cut(s)	63, 513
HaeIII	GGCC	6 cut(s)	129, 177, 207, 251, 275, 423
HapII	CCGG	3 cut(s)	6, 126, 227
HhaI	GCGC	3 cut(s)	62, 467, 512
Hin1I	GRCGYC	1 cut(s)	510
Hin1II	CATG	4 cut(s)	58, 389, 406, 476
Hin6I	GCGC	3 cut(s)	60, 465, 510
HinP1I	GCGC	3 cut(s)	60, 465, 510
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	3 cut(s)	6, 126, 227
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	37, 234
Hpy188I	TCNGA	3 cut(s)	95, 307, 351
Hpy188III	TCNNGA	3 cut(s)	77, 110, 411
Hpy8I	GTNNAC	2 cut(s)	37, 234
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	208, 307, 346
HpyCH4IV	ACGT	2 cut(s)	147, 515
HpyCH4V	TGCA	2 cut(s)	385, 476
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 236, 248, 281, 462, 473, 509
HpySE526I	ACGT	2 cut(s)	147, 515
Hsp92I	GRCGYC	1 cut(s)	510
Hsp92II	CATG	4 cut(s)	58, 389, 406, 476
HspAI	GCGC	3 cut(s)	60, 465, 510
KasI	GGCGCC	1 cut(s)	509
KroI	GCCGGC	2 cut(s)	125, 226
KroNI	GCCGGC	2 cut(s)	127, 228
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	24, 95, 243, 264, 346, 489
LmnI	GCTCC	3 cut(s)	96, 308, 413
LpnPI	CCDG	8 cut(s)	19, 55, 82, 139, 223, 240, 269, 424
Lsp1109I	GCAGC	1 cut(s)	5
MaeII	ACGT	2 cut(s)	147, 515
MalI	GATC	6 cut(s)	26, 97, 245, 266, 348, 491
MboI	GATC	6 cut(s)	24, 95, 243, 264, 346, 489
MboII	GAAGA	1 cut(s)	370
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	76, 410
MluCI	AATT	1 cut(s)	379
Mly113I	GGCGCC	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	107
MroNI	GCCGGC	2 cut(s)	125, 226
MseI	TTAA	1 cut(s)	429
MspI	CCGG	3 cut(s)	6, 126, 227
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	7 cut(s)	15, 236, 248, 281, 462, 473, 509
NaeI	GCCGGC	2 cut(s)	127, 228
NarI	GGCGCC	1 cut(s)	510
NdeII	GATC	6 cut(s)	24, 95, 243, 264, 346, 489
NgoMIV	GCCGGC	2 cut(s)	125, 226
NlaIII	CATG	4 cut(s)	58, 389, 406, 476
NlaIV	GGNNCC	5 cut(s)	208, 225, 348, 409, 511
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PdiI	GCCGGC	2 cut(s)	127, 228
PkrI	GCNGC	3 cut(s)	20, 190, 241
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	107
PluTI	GGCGCC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	5 cut(s)	208, 225, 348, 409, 511
PspPI	GGNCC	3 cut(s)	206, 250, 422
PsuI	RGATCY	1 cut(s)	346
PvuI	CGATCG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	3 cut(s)	19, 189, 240
Sau3AI	GATC	6 cut(s)	24, 95, 243, 264, 346, 489
Sau96I	GGNCC	3 cut(s)	206, 250, 422
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	2 cut(s)	76, 410
SfoI	GGCGCC	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	6 cut(s)	123, 158, 186, 189, 239, 262
SspDI	GGCGCC	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	498
TaiI	ACGT	2 cut(s)	150, 518
TaqI	TCGA	2 cut(s)	78, 246
TasI	AATT	1 cut(s)	379
TauI	GCSGC	2 cut(s)	191, 242
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	2 cut(s)	49, 241
TseI	GCWGC	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	49, 241
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.